Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0575
         (300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    29   0.47 
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    28   1.4  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    28   1.4  
Z68220-7|CAI79220.1|  260|Caenorhabditis elegans Hypothetical pr...    26   4.4  
Z68220-6|CAA92486.3|  293|Caenorhabditis elegans Hypothetical pr...    26   4.4  
AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical...    26   4.4  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    25   7.6  
Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical pr...    25   7.6  
AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical...    25   7.6  

>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 300 LVGVDEGLSTREHAHLYISMNCLTTSTFMY 211
           L+G+D  L   EH    IS+N L T+TF Y
Sbjct: 406 LLGLDGSLIFLEHVFWVISLNTLFTATFAY 435


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 173 IAKEYNIEKSCDKYMNVDVVKQ 238
           +  + N+ + C+K+M +DV+KQ
Sbjct: 212 VQSDMNLNEDCEKWMEIDVLKQ 233


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 173 IAKEYNIEKSCDKYMNVDVVKQ 238
           +  + N+ + C+K+M +DV+KQ
Sbjct: 212 VQSDMNLNEDCEKWMEIDVLKQ 233


>Z68220-7|CAI79220.1|  260|Caenorhabditis elegans Hypothetical
           protein T20D3.3b protein.
          Length = 260

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +2

Query: 53  GTMVFTKEPMVNLDMKMKELCIMKLLDH---ILQPTMFEDIKEIAKEYN 190
           G+  FTK  M  L +KMK++ +   +DH    +Q  + + +++I KE N
Sbjct: 145 GSKYFTKLEMFGLKLKMKKV-LKYEIDHSKGFIQEKLKKRLEKITKELN 192


>Z68220-6|CAA92486.3|  293|Caenorhabditis elegans Hypothetical
           protein T20D3.3a protein.
          Length = 293

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +2

Query: 53  GTMVFTKEPMVNLDMKMKELCIMKLLDH---ILQPTMFEDIKEIAKEYN 190
           G+  FTK  M  L +KMK++ +   +DH    +Q  + + +++I KE N
Sbjct: 178 GSKYFTKLEMFGLKLKMKKV-LKYEIDHSKGFIQEKLKKRLEKITKELN 225


>AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical
           protein Y46G5A.29 protein.
          Length = 770

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
 Frame = +2

Query: 5   YWPAWPRRHSAISGGYGTMVFTKEPMV---NLDMKMKELCIMKLL--DHIL--QPTMFED 163
           YW  W  RH+ + G Y     T+ P +   NL+  +++    K++  + +L  Q  +FE+
Sbjct: 178 YWEKWRPRHAFLKGPY-QKYSTQNPNIFIYNLEKDIEQRTSEKVVTSEPVLPSQHPLFEE 236

Query: 164 IKEIAK 181
            +EI K
Sbjct: 237 QREILK 242


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 218 SCTCRNFSRCYTPWRSP*CPQTWSAGGYG 132
           SC C+  S C    RS   P   S+GG+G
Sbjct: 26  SCGCQASSSCANSCRSTCRPTCSSSGGFG 54


>Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical
           protein F14F3.3 protein.
          Length = 453

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 ILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVK-QFMEMYR 256
           I+ PT      ++    NIE S D  +N+D+ K +F + +R
Sbjct: 272 IMGPTDLNAFDKLKTRENIEMSSDAIVNLDIPKVEFSDGFR 312


>AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical
           protein Y94H6A.1 protein.
          Length = 498

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 74  EPMVNLDMKMKELCIMKLLDHILQPT 151
           EPM +LD+ ++EL +MK +    +P+
Sbjct: 360 EPMDSLDVSIEELVLMKFIMMFSEPS 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,643,917
Number of Sequences: 27780
Number of extensions: 117764
Number of successful extensions: 340
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)