Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0575
         (300 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14970.1 68416.m01893 zinc finger (C3HC4-type RING finger) fa...    28   1.3  
At5g60900.1 68418.m07640 lectin protein kinase family protein co...    26   5.4  
At1g14686.1 68414.m01754 epsin N-terminal homology (ENTH) domain...    25   7.1  
At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04...    25   9.4  
At5g26090.1 68418.m03104 hypothetical protein                          25   9.4  

>At3g14970.1 68416.m01893 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 220

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = +2

Query: 56  TMVFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVK 235
           T  F K  + + D +  ++ +  +LD I  P   + + E+       K CDK  NV  V 
Sbjct: 66  THEFDKGLLFSGDREQIQVIVCHILDLIKAPRYIDVVTELIDAILDLKKCDKISNVKEVD 125

Query: 236 QFMEMYRW 259
             + +  W
Sbjct: 126 VVINVIVW 133


>At5g60900.1 68418.m07640 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 748

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -3

Query: 157 KHGRLEDMVKQ----LHDAKLLHLHVKVYHWFLGEDH 59
           + GRLED+ +     ++D + +  +VK+  W + E+H
Sbjct: 666 RQGRLEDLTEDDSEAMNDMETVERYVKIAIWCIQEEH 702


>At1g14686.1 68414.m01754 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related similar to clathrin assembly protein
           AP180 (GI:6492344) [Xenopus laevis]; contains Pfam
           PF01417: ENTH domain. ENTH (Epsin N-terminal homology)
           domain;
          Length = 339

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 224 DVVKQFMEMYRWACSRV 274
           +VV + ME+Y W C R+
Sbjct: 193 NVVSEIMEIYGWICRRI 209


>At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 623

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 240 NCLTTSTFMYLSQLFSMLYSLAISLMSSNMVGWRI 136
           +C TTS + ++  L   LY++    + +  V WRI
Sbjct: 560 DCYTTSDYRFVKGLVWKLYAIKDISVETQCVLWRI 594


>At5g26090.1 68418.m03104 hypothetical protein 
          Length = 401

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 8   WPAWPRRHSAISGG 49
           W  WPRR S  SGG
Sbjct: 207 WKPWPRRTSRSSGG 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,460,274
Number of Sequences: 28952
Number of extensions: 114134
Number of successful extensions: 310
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)