Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0558
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    87   2e-18
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   9.6  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   9.6  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 87.0 bits (206), Expect = 2e-18
 Identities = 37/66 (56%), Positives = 51/66 (77%)
 Frame = -1

Query: 254 NNQIRIIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSF 75
           + +IR+I+T+ DVIHS  +PSLGIK D  P RLNQ +  I+R G+F+GQCSE+CG  HS 
Sbjct: 168 DTRIRLILTSGDVIHSWAVPSLGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCGVLHSS 227

Query: 74  IPIVIE 57
           +PIV++
Sbjct: 228 MPIVVQ 233



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
 Frame = -2

Query: 508 ELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSDF-----NNI 344
           E I T+IPA  LI +A                 +T+K+IG Q +  YE +DF       +
Sbjct: 78  EFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELNDFVTNENEPV 137

Query: 343 EFDSYIIPSNEIKNNEFRLLDVDNRIILPITTKFEL 236
            FDSY++P  +++    R L+VDNR++LPI T+  L
Sbjct: 138 SFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRL 173


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 282 SNSRNSLFFISLDGIIYESNSILLKSE 362
           + SRN+L+FI LD     SN   + SE
Sbjct: 175 TGSRNTLYFIELDKKTENSNYFEISSE 201


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 390 PIDFSVISGLLSSSNKYNNRNDGKAMKINVKAGIIVQINSLFVLLIKID 536
           P D + I  LLS  N  + +   +  +  +  GI+  I  +F   I++D
Sbjct: 602 PFDINRIHDLLSHKNLLSLKKFSRQQQTKIILGILKGIQQIFANDIRVD 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,036,297
Number of Sequences: 5004
Number of extensions: 36647
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)