Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0558
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       112   2e-25
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       112   2e-25
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        85   5e-17

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  112 bits (270), Expect = 2e-25
 Identities = 47/66 (71%), Positives = 57/66 (86%)
 Frame = -1

Query: 254 NNQIRIIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSF 75
           N  +R++ITA DVIHS  +P+L +K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF
Sbjct: 157 NTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSF 216

Query: 74  IPIVIE 57
           +PIVIE
Sbjct: 217 MPIVIE 222



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
 Frame = -2

Query: 508 ELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSDFNN--IEFD 335
           E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFD
Sbjct: 70  EVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFD 129

Query: 334 SYIIPSNEIKNNEFRLLDVDNRIILPITT 248
           SY++P+ ++   +FRLL+VDNR+++PI T
Sbjct: 130 SYMVPTTDLNQGDFRLLEVDNRLVVPINT 158


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  112 bits (270), Expect = 2e-25
 Identities = 47/66 (71%), Positives = 57/66 (86%)
 Frame = -1

Query: 254 NNQIRIIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSF 75
           N  +R++ITA DVIHS  +P+L +K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF
Sbjct: 157 NTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSF 216

Query: 74  IPIVIE 57
           +PIVIE
Sbjct: 217 MPIVIE 222



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
 Frame = -2

Query: 508 ELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSDFNN--IEFD 335
           E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFD
Sbjct: 70  EVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFD 129

Query: 334 SYIIPSNEIKNNEFRLLDVDNRIILPITT 248
           SY++P+ ++   +FRLL+VDNR+++PI T
Sbjct: 130 SYMVPTTDLNQGDFRLLEVDNRLVVPINT 158


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
 Frame = -2

Query: 508 ELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSDFNN--IEFD 335
           E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFD
Sbjct: 70  EVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFD 129

Query: 334 SYIIPSNEIKNNEFRLLDVDNRIILPITT 248
           SY++P+ ++   +FRLL+VDNR+++PI T
Sbjct: 130 SYMVPTTDLNQGDFRLLEVDNRLVVPINT 158



 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 26/46 (56%), Positives = 34/46 (73%)
 Frame = -1

Query: 254 NNQIRIIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIF 117
           N  +R++ITA DVIHS  +P+L +K+DA PGRLNQT FFI +   F
Sbjct: 157 NTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWSF 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,343,997
Number of Sequences: 59808
Number of extensions: 213050
Number of successful extensions: 376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)