Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0556
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    29   0.40 
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   0.93 
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   1.2  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   2.9  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   3.8  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    25   6.6  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   6.6  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   6.6  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   6.6  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   8.7  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    24   8.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   8.7  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 190 KKTDSIDLRDPNGLRRRVSRFDAKRD 267
           K  D    RDPN LR R+++FD++ D
Sbjct: 554 KNLDVTFRRDPNTLRPRINKFDSQMD 579


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = -3

Query: 406 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHQNARRDVEA 227
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+       + +++R  V  
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148

Query: 226 HLDR 215
            + R
Sbjct: 149 WVHR 152


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +1

Query: 7   PARAGSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR-SRDAR 183
           P+ + +  S  +  S   SQH   L    P  E+KS  D S PR +   +      R  R
Sbjct: 126 PSHSQNPSSSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRKPSFFSKSNLKRKYR 184

Query: 184 VKKKTDSIDL 213
             K  D+ +L
Sbjct: 185 YLKNPDAWNL 194


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 70  DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 249
           D  +PS  P    +SS+  S  RH  +   +L S     +   D   LRD +  + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 119 VDDFRSWRGVVLGRAASCCDLLRLS 45
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 255 IKTRDATSKPIWIAEIDAIGFFLNTCITAP 166
           + T      P W+AE+ AI  F++  + AP
Sbjct: 34  VPTGSKVELPFWLAEVLAINSFVSIHMPAP 63


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +2

Query: 95  PARNGSRLQTIPSPDIELSYIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLMRNATSK 274
           P+ NG R++   SP  E+++     AVM  +RK+ + + S     +  + + + R   S+
Sbjct: 186 PSENG-RIRVSMSPQNEINFTPENPAVMEKIRKRGVCN-SVEGCLYSGSPKSVKRVRESE 243

Query: 275 VTLFRASRLSGLH 313
            T   A  L  LH
Sbjct: 244 ETKVYAQLLIDLH 256


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 361 SKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHQNARRDVEA 227
           S+A A LA +       + RE    KQ + T R+SH   RR+++A
Sbjct: 164 SEARARLANTQGKKAKRKDRE----KQLELTRRLSHLQKRRELKA 204


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 49  SLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 210
           +++  + D  L  TT    +  STDY   + +TE   +L S      K+T SI+
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTE---NLNSDSDIQNKRTKSIE 399


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 37  GAGLSLNRSQHDAALPSTTPRQERKSS 117
           G  LS+  S+ DAALP+  P  E + S
Sbjct: 427 GRPLSIADSECDAALPTVVPELEIEGS 453


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 239 RRRSPFGSRRSMLSVFFLTRASRLRRSG 156
           RRR P  SRR +       RA ++R SG
Sbjct: 23  RRRVPLDSRRRVRRACLSCRAKKIRCSG 50


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 324  ICSLWSPESREALNNVTLLVAFRIKTRDATSKPIWIAEIDAI 199
            I S W PE++E + N+  L    +   + T K  ++ E D+I
Sbjct: 1174 ILSEWLPEAKERIRNIKKLKTDMLTKLENTVK--YLCEYDSI 1213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,531
Number of Sequences: 5004
Number of extensions: 34825
Number of successful extensions: 101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)