Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0556
(429 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.71
SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.94
SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25) 28 2.9
SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 28 2.9
SB_34584| Best HMM Match : Drf_FH1 (HMM E-Value=0.99) 28 2.9
SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083) 27 5.0
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 27 5.0
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_7399| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_56221| Best HMM Match : AOX (HMM E-Value=3.6) 27 8.7
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 27 8.7
>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 30.3 bits (65), Expect = 0.71
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 2 HSRHGQVVTNHLAQG*VSTDRSTTLLYRAQHPARNGSRLQTIPSPDIELSYIRTFGAVMH 181
H+ H Q+ ++HL Q +T + + + HPA + R Q +PS + + +
Sbjct: 230 HNYHPQLPSSHLLQASTTTIQPSLTIVHNYHPAISNHRPQ-LPSSHLLPFIAHQYNPTIS 288
Query: 182 VLRKKPIAS 208
L + P+ S
Sbjct: 289 YLHRSPVPS 297
>SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 29.9 bits (64), Expect = 0.94
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 85 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 222
STT E +SSTD EP + + + +RD R ++ D RDP
Sbjct: 195 STTETSETQSSTDTREPVNNRDTRETVNNRDTR--DTVNNRDTRDP 238
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 88 TTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 222
TT E +S+TD +P + + + +RD R ++ D RDP
Sbjct: 92 TTETPETQSTTDTRDPVNNRDTRDPINNRDTR--DPVNNTDTRDP 134
>SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 58 RSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDL 213
RS D ST R S+ S+P+ EL+ R++ A ++ TD + L
Sbjct: 218 RSYQDLHRQSTPQHGRRGSTQQSSQPKFVNELFYKQRAKSAHSQRPTDKLHL 269
>SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 43 GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 192
G S+ RS D A+ T PR ++ P P++ SRD +K
Sbjct: 300 GPSIARSHSDWAITRTKPRNRERAPESSQAPNDEAGKNPEVVSRDTMAQK 349
>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
Length = 626
Score = 28.3 bits (60), Expect = 2.9
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 16 AGSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTD--YSEPRHRTELYPDLRSRD 177
A S +SP + LSL S +AAL S P+Q S+T S H ++L L S D
Sbjct: 371 AESSKSPTSPLSLQGS--EAALTSPVPQQSELSTTSPMSSTSPHSSDLVSPLDSAD 424
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 61 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 222
++ AAL S P+ E STD S +H T+L L S D+ + D+ +P
Sbjct: 434 AESKAALLSNLPK-ESGPSTDSSISQHSTDLVSTLESGDSSTFAQDKPADVVEP 486
>SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 492
Score = 28.3 bits (60), Expect = 2.9
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 16 AGSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTD--YSEPRHRTELYPDLRSRD 177
A S +SP + LSL S +AAL S P+Q S+T S H ++L L S D
Sbjct: 26 AESSKSPTSPLSLQGS--EAALTSPVPQQSELSTTSPMSSTSPHSSDLVSPLDSAD 79
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 61 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 222
++ AAL S P+ E STD S +H T+L L S D+ + D+ +P
Sbjct: 89 AESKAALLSNLPK-ESGPSTDSSISQHSTDLVSTLESGDSSTFAQDKPADVVEP 141
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 85 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKK 195
S QER++ D + PRH EL PD+R D RV ++
Sbjct: 1453 SRVESQERQTMRD-TRPRHPDELRPDIR-HDIRVAQE 1487
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 50 VSTDRSTTLLYRAQHPARNGSRLQTIPSPD 139
+ T ST +R HP + S +QT+PS D
Sbjct: 168 IQTLPSTDSAHRTDHPTQTESTVQTLPSTD 197
>SB_34584| Best HMM Match : Drf_FH1 (HMM E-Value=0.99)
Length = 217
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -1
Query: 426 FMHSAERPVVRSYHPRDYA*TPLRPKPA*PNPARICSLWSPESREALNNVTLLVAFRIKT 247
F H + P+ R +HP PL P+ + + ++ PESREA V V RI
Sbjct: 153 FHHESNEPLPRMFHPESN--EPL-PRMFTESNEHLPRMFHPESREAAVVVKPFVPVRIAH 209
Query: 246 RDA 238
++A
Sbjct: 210 QNA 212
>SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 82 PSTTPRQERKSSTDYSE-PRHRTELYPD 162
P+T PR +R+S T S+ RH + L PD
Sbjct: 8 PNTIPRSDRRSRTGISQRHRHTSSLTPD 35
>SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 298 SGGSKQCDFTSRVSHQNARRDVEAHLDRGDRCY 200
S G+K C+ + RDV H+D+ +CY
Sbjct: 50 SQGAKLCEEIKDSFEELEERDVSVHIDKFSKCY 82
>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
Length = 1266
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 370 LNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHQNARR 239
L S +E E+G + +VEPR G S T+ +S N R
Sbjct: 318 LERSDSEMRENEAGDEKTSVEPRSDGVSTSSQDTAGLSESNGGR 361
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 61 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRD 219
S HD S +P ++ + + SEPR + + +P R+ + + D+ D D
Sbjct: 475 SNHDRVNNSQSPSEQPLNQANGSEPRKQKKQFPMERTTNIQPNGSGDNHDRED 527
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 27.5 bits (58), Expect = 5.0
Identities = 23/84 (27%), Positives = 37/84 (44%)
Frame = +1
Query: 10 ARAGSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVK 189
+R+GSD S G + R+ D S+ + ++ + HR P + R R
Sbjct: 100 SRSGSD-SGSIGATRYRTSGDR--DSSLDKLHENNTHNGGFADHRDGAEPVAKPRTHRKS 156
Query: 190 KKTDSIDLRDPNGLRRRVSRFDAK 261
KT S+D++ NG R S D +
Sbjct: 157 SKTSSLDIKLKNGSRGSESGEDGQ 180
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +1
Query: 49 SLNRSQHDAALPSTTPRQERKSSTDYSEPRHR----TELYPDLRSRDARVKKKTDSIDLR 216
S +R + D+ PS PR+ RKS + S PR R + P +RS ++ +
Sbjct: 904 SPSRRRRDSPTPSPPPRRRRKSPSP-SPPRRRRRSPSNSPPPMRSSPLPPPQRKRASTPP 962
Query: 217 DPNGLRRRVS 246
P RR+V+
Sbjct: 963 SPRRARRKVA 972
>SB_7399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 97 RQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRR 240
++ER+S+ + HR+ + D + R + V + + + GLRRR
Sbjct: 306 QKERRSNVGGDQKEHRSNVGGDQKERRSSVGESLATASTKHCRGLRRR 353
>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1087
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Frame = +1
Query: 1 PLPARAGSD---ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRS 171
P+ AR G SP L+R Q + T P + R S E R YP S
Sbjct: 566 PMSARRGGPVQTSSPQTSPILSRRQDVRSSSHTAPSRGRSDSPPTPEGRGAPPPYPGYSS 625
Query: 172 RDARVKKKTDSIDLRDPNGLRRRVS 246
R ++ + + P R S
Sbjct: 626 TPVRDQRSSPPLTATPPRSRRNSFS 650
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 216 RSKWASTSRLAF*CETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPAD 386
R + +++R + E +L + H L PP +S SA +SA F P D
Sbjct: 26 RGRPTASARARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPRD 82
>SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)
Length = 361
Score = 26.6 bits (56), Expect = 8.7
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = +1
Query: 52 LNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGL 231
L+R H +LP + +SS D S R T P+LR+ D D+ D R + L
Sbjct: 2 LSRQSH--SLPPSDVASSSRSSKDVSSRRATTVTLPELRAMD----DLADAADRRVAHAL 55
Query: 232 RRRVSRFDAKRD 267
S D + D
Sbjct: 56 PIASSESDEEAD 67
>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 88 TTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 222
TT E +S+TD +P + + + +RD R ++ D RDP
Sbjct: 92 TTETPETQSTTDTRDPVNNRDTRDPINNRDTR--DPVNNTDTRDP 134
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 216 RSKWASTSRLAF*CETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 368
R +W+ F E L CL PP++ G I L D + LA A+
Sbjct: 1250 RGRWSDFFSNLFQLE-HLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,651,345
Number of Sequences: 59808
Number of extensions: 307300
Number of successful extensions: 1005
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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