Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0556
(429 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homo... 33 0.11
AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditi... 33 0.11
AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditi... 33 0.11
AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein. 33 0.11
Z93388-3|CAB07655.1| 230|Caenorhabditis elegans Hypothetical pr... 27 4.3
U53139-1|AAS80341.1| 90|Caenorhabditis elegans Hypothetical pr... 27 4.3
AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical... 27 4.3
AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical ... 27 4.3
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 27 5.7
Z29116-4|CAA82370.2| 206|Caenorhabditis elegans Hypothetical pr... 27 7.5
U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical pr... 27 7.5
U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical pr... 27 7.5
U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical pr... 27 7.5
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 27 7.5
AF000265-12|ABQ13076.1| 302|Caenorhabditis elegans Hypothetical... 27 7.5
AF000265-11|AAK68199.1| 298|Caenorhabditis elegans Hypothetical... 27 7.5
Z99281-46|CAB54455.3| 795|Caenorhabditis elegans Hypothetical p... 26 10.0
Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical pr... 26 10.0
U97016-8|AAB52350.2| 779|Caenorhabditis elegans Hypothetical pr... 26 10.0
AY305829-1|AAR11974.1| 281|Caenorhabditis elegans nuclear recep... 26 10.0
AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear recep... 26 10.0
AF016438-6|AAZ32805.1| 284|Caenorhabditis elegans Nuclear hormo... 26 10.0
AF016438-5|AAB65893.2| 408|Caenorhabditis elegans Nuclear hormo... 26 10.0
>DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homolog
protein.
Length = 578
Score = 32.7 bits (71), Expect = 0.11
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 87 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF*CET 263
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+ C +
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAYSCHS 223
Query: 264 -RLVKSHCL 287
L +SH L
Sbjct: 224 PALAESHSL 232
>AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform a protein.
Length = 578
Score = 32.7 bits (71), Expect = 0.11
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 87 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF*CET 263
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+ C +
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAYSCHS 223
Query: 264 -RLVKSHCL 287
L +SH L
Sbjct: 224 PALAESHSL 232
>AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform b protein.
Length = 550
Score = 32.7 bits (71), Expect = 0.11
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 87 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF*CET 263
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+ C +
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAYSCHS 223
Query: 264 -RLVKSHCL 287
L +SH L
Sbjct: 224 PALAESHSL 232
>AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein.
Length = 550
Score = 32.7 bits (71), Expect = 0.11
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 87 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF*CET 263
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+ C +
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAYSCHS 223
Query: 264 -RLVKSHCL 287
L +SH L
Sbjct: 224 PALAESHSL 232
>Z93388-3|CAB07655.1| 230|Caenorhabditis elegans Hypothetical
protein T10C6.5 protein.
Length = 230
Score = 27.5 bits (58), Expect = 4.3
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Frame = +1
Query: 7 PARAGSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRD--- 177
PAR G+ G L+ +PS T + R++ + + +L +L ++
Sbjct: 11 PARGGTARGEGDLSKLSNQYSSKDMPSHTKMKYRQTGQETEADLRKKDLRRELEDKERNA 70
Query: 178 ARVKKKTDSIDLRDPNGLRRRVSRFDAK 261
R K+ DS + R+R+ + A+
Sbjct: 71 IREKRARDSASSSSSHSKRQRMDQIAAE 98
>U53139-1|AAS80341.1| 90|Caenorhabditis elegans Hypothetical
protein F18E3.11 protein.
Length = 90
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 85 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVS 246
STT RKSST PRH + + ++ + S L D N L+R+ S
Sbjct: 30 STTQVVSRKSSTSSDAPRHSLNITVG-EAEMCQITRNNSSNSLNDFNCLQRKNS 82
>AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical
protein Y38H6C.14 protein.
Length = 814
Score = 27.5 bits (58), Expect = 4.3
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +1
Query: 1 PLPARAGSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDA 180
PLP S E ++ +RS + S+ Q+ S +DY PRH +L P RS +
Sbjct: 61 PLPTMMTSSE-----ITQHRSSYKVTKSSSCHFQDEASPSDYQMPRH-LDLKP--RSSEV 112
Query: 181 RV 186
RV
Sbjct: 113 RV 114
>AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical
protein VC5.2 protein.
Length = 588
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 227 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWR 96
P R+ +LS FF ++ SR+RRS + R D SW+
Sbjct: 150 PEKRRQELLSEFFASKPSRVRRSTMSRKIAREPTPLTPDMLSWQ 193
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 27.1 bits (57), Expect = 5.7
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Frame = +1
Query: 10 ARAGSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSE--PRHRTELY-----PDLR 168
+RA S + G S + AA S+ P Q++ S+ Y P+ E Y PD R
Sbjct: 263 SRAPSVQDYGVRASYDPYTQPAAPVSSYPSQQQPSAGYYDNYAPKTAYESYGRERGPDPR 322
Query: 169 S----RDARVKKKTDSIDLRDPNGLRRRVSRF 252
RD+R+ DS L DP R S +
Sbjct: 323 DVRDPRDSRMPDPRDSRALSDPYAAESRYSEY 354
>Z29116-4|CAA82370.2| 206|Caenorhabditis elegans Hypothetical
protein ZK507.4 protein.
Length = 206
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 295 GGSKQCDFTSRVSHQNARRDVEAHLDRGDRCYRFFS*HVHH 173
GGS D+ S SH + R ++LD G+ C F +V++
Sbjct: 15 GGSNAHDWDSFESHHSEPRLRTSNLDVGEYCATFHENYVYY 55
>U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical
protein F08F8.9c protein.
Length = 517
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 7 PARAGSDES--PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDL 165
P A SD S P +G S + + S+ P Q SS+ Y + T + PDL
Sbjct: 338 PQSATSDYSTVPTSGTSNVFPSYQTSEYSSFPNQTPSSSSSYQQSSQYTPMVPDL 392
>U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical
protein F08F8.9a protein.
Length = 626
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 7 PARAGSDES--PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDL 165
P A SD S P +G S + + S+ P Q SS+ Y + T + PDL
Sbjct: 338 PQSATSDYSTVPTSGTSNVFPSYQTSEYSSFPNQTPSSSSSYQQSSQYTPMVPDL 392
>U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical
protein F08F8.9b protein.
Length = 624
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 7 PARAGSDES--PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDL 165
P A SD S P +G S + + S+ P Q SS+ Y + T + PDL
Sbjct: 338 PQSATSDYSTVPTSGTSNVFPSYQTSEYSSFPNQTPSSSSSYQQSSQYTPMVPDL 392
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 10 ARAGSDESP-GAGLSLNRSQHDAALPSTT-PRQERKSSTDY 126
+RA S S G+ SLNR Q DA PST+ +R+ ST +
Sbjct: 101 SRAASRTSKRGSSKSLNRPQIDADEPSTSGTNPDRRPSTHF 141
>AF000265-12|ABQ13076.1| 302|Caenorhabditis elegans Hypothetical
protein C18E3.9b protein.
Length = 302
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 22 SDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRH 141
S +SPGA S ++ D + PSTT R+ S D + +H
Sbjct: 142 SSQSPGASPSSDQIFIDDSQPSTTKRRWVISEPDDNSDKH 181
>AF000265-11|AAK68199.1| 298|Caenorhabditis elegans Hypothetical
protein C18E3.9a protein.
Length = 298
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 22 SDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRH 141
S +SPGA S ++ D + PSTT R+ S D + +H
Sbjct: 142 SSQSPGASPSSDQIFIDDSQPSTTKRRWVISEPDDNSDKH 181
>Z99281-46|CAB54455.3| 795|Caenorhabditis elegans Hypothetical
protein Y57G11C.32 protein.
Length = 795
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 4 LPARAGSDESPGAGLSLNRSQHDAALPSTTPRQE 105
LP AGS L+ N+S+ D + +TP+QE
Sbjct: 692 LPLEAGSARYADNLLTYNKSKEDRNVDISTPKQE 725
>Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical
protein F23B12.5 protein.
Length = 507
Score = 26.2 bits (55), Expect = 10.0
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 155 IRTFGAVMHVLRKKPIASISAIQMGFDVASRVLMRNATSK 274
+RT G LR A+ISA +GF +SR L A +K
Sbjct: 8 LRTIGG----LRPSTTAAISAANIGFTQSSRALSTGAAAK 43
>U97016-8|AAB52350.2| 779|Caenorhabditis elegans Hypothetical
protein B0261.1 protein.
Length = 779
Score = 26.2 bits (55), Expect = 10.0
Identities = 19/83 (22%), Positives = 32/83 (38%)
Frame = +1
Query: 1 PLPARAGSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDA 180
P P D S G + D++ S++ + E + E +L+ R
Sbjct: 512 PAPVVVTIDASEGELGDTSTDAADSSSASSSDDDALRKDAARREKQRMKEARRNLKPRKT 571
Query: 181 RVKKKTDSIDLRDPNGLRRRVSR 249
KK +D DP +++VSR
Sbjct: 572 VADKKPVYVDTTDPKYAQQKVSR 594
>AY305829-1|AAR11974.1| 281|Caenorhabditis elegans nuclear receptor
NHR-56 protein.
Length = 281
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 40 AGLSLNRSQHDAALPSTTPRQERKSSTDYS 129
AG+ N+ QHD L ST+ + SS +S
Sbjct: 68 AGMDANKFQHDRDLISTSTSESSDSSGSFS 97
>AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear receptor
NHR-56 protein.
Length = 433
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 40 AGLSLNRSQHDAALPSTTPRQERKSSTDYS 129
AG+ N+ QHD L ST+ + SS +S
Sbjct: 96 AGMDANKFQHDRDLISTSTSESSDSSGSFS 125
>AF016438-6|AAZ32805.1| 284|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 56, isoform b protein.
Length = 284
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 40 AGLSLNRSQHDAALPSTTPRQERKSSTDYS 129
AG+ N+ QHD L ST+ + SS +S
Sbjct: 71 AGMDANKFQHDRDLISTSTSESSDSSGSFS 100
>AF016438-5|AAB65893.2| 408|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 56, isoform a protein.
Length = 408
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 40 AGLSLNRSQHDAALPSTTPRQERKSSTDYS 129
AG+ N+ QHD L ST+ + SS +S
Sbjct: 71 AGMDANKFQHDRDLISTSTSESSDSSGSFS 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,312,378
Number of Sequences: 27780
Number of extensions: 217812
Number of successful extensions: 702
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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