Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0552
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 148 7e-37
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 30 0.37
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 27 2.0
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.5
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 27 3.5
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 3.5
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.6
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 26 4.6
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 25 8.0
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 25 8.0
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 25 8.0
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 148 bits (359), Expect = 7e-37
Identities = 67/87 (77%), Positives = 78/87 (89%), Gaps = 1/87 (1%)
Frame = -1
Query: 513 EGETDDEYIWCIEQTL-IFPDGKPLNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTG 337
+GET++EY+WCIEQ L FP GKPLNMILDDGGDLT LVH ++P+LL D++GI+EETTTG
Sbjct: 102 KGETEEEYLWCIEQQLKSFPSGKPLNMILDDGGDLTALVHERHPELLVDIRGISEETTTG 161
Query: 336 VHNLYKMFREGLLKVPAINVNDSVTKS 256
VHNLYKMF+E LKVPAINVNDSVTKS
Sbjct: 162 VHNLYKMFKENKLKVPAINVNDSVTKS 188
Score = 145 bits (351), Expect = 6e-36
Identities = 65/87 (74%), Positives = 78/87 (89%)
Frame = -3
Query: 262 KKQFDNLYGCRESLLDGIKRATDIMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTEID 83
K +FDNL+GC+ESL+DGIKRATD+MIAGKV VVAG+GDVGKGC+ + + G RVIVTE+D
Sbjct: 187 KSKFDNLFGCKESLVDGIKRATDVMIAGKVAVVAGFGDVGKGCSTSLRSQGARVIVTEVD 246
Query: 82 PINALQAAMEGFQVTTMEEAAEVGQIF 2
PINALQAAM+GF+VTTMEEA + GQIF
Sbjct: 247 PINALQAAMDGFEVTTMEEAVKEGQIF 273
Score = 63.3 bits (147), Expect = 3e-11
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = -2
Query: 620 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWK 510
L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWK
Sbjct: 66 LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWK 102
Score = 49.2 bits (112), Expect = 6e-07
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -3
Query: 706 KYAPAKILKGARIAGSLHMTVQTAVLIET 620
KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 37 KYAKSQPLKGARIAGCLHMTIQTAVLIET 65
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 29.9 bits (64), Expect = 0.37
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = -3
Query: 187 IAGKVCVVAGYGD-VGKGCAQAFKGFGGRVIVTEI--DPINALQAAME--GFQVTTME 29
+ GK CVV G +G A AF GG VI+T + DP + E G QV T++
Sbjct: 19 LKGKNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKKLAEETGVQVHTLK 76
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = -1
Query: 384 DLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVNDSVTKSNSTTCM---DVGSLCS 217
D+ ++ ET TG H++Y+ +K+P+ + V N T D G L S
Sbjct: 996 DINRESNSDNGETITGTHDVYRQTDNPEIKLPSDTASSKVDTHNPTVTQPTDDTGGLNS 1054
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 425 SSKIILRGFPSGK-INVCSIHQIYSSSVSPSRHRWVFLRQPVQLRPRLVYYKCYCWTIV 598
++K+ L F K I I+ +Y+S + P + ++ + LR R VY++ W ++
Sbjct: 409 NAKMCLSDFEKRKQIFAEFIYWLYNSFIIPILQSFFYITESSDLRNRTVYFRKDIWKLL 467
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +2
Query: 341 VVVSSVIPFTSFKRSGYLVWTK-FVK-SPPSSKIILRGFPSGKINVCSIHQIYSSSVSPS 514
++++ T +K S L+ ++ F + SP ++K++L + +IY S+ +
Sbjct: 98 LIIAEQHNLTEYKFSLQLLLSRVFCRTSPKAAKVLLTRCVREAEEYAKVAEIYHSNNQSN 157
Query: 515 RHRWVF 532
HRWV+
Sbjct: 158 PHRWVY 163
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 116 TFERLGASFSNVTITCHYTNFPGNHYVCCPFDSVEQRL 229
++E SFS+VTI C + F + ++ C S ++L
Sbjct: 610 SYENYKQSFSDVTIYCGTSMFHSHKFILCARSSFLRKL 647
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 311 RNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKIILRGF 451
RN+L++ CT + + F++ G L + K VK P + + + RGF
Sbjct: 282 RNLLFE-CTEQEL-----YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 134 ASFSNVTITCHY-TNFPGNHYVCCPFDSVEQRLPTSIQVVELLFVTESLTLIAGTF 298
+S+S+++ T N G V PF ++ LP IQ++ E L AG F
Sbjct: 415 SSYSHLSDTMLVPANMAGIPSVSIPFGTLNNGLPMGIQIMAQYLNDEDLLSFAGQF 470
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 417 DLTNLVHTKYPDLLKDVKG 361
D N + TK+P ++KDV+G
Sbjct: 376 DRLNKLQTKFPHVMKDVRG 394
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 450 KPLNMILDDGGDLTNLVHTKYPDLLK-DVKGI--TEETTTGVHNLYKMFRE 307
K +N + G++ + P LK V GI ++ +G HN+YK FR+
Sbjct: 45 KMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRD 95
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 450 KPLNMILDDGGDLTNLVHTKYPDLLK-DVKGI--TEETTTGVHNLYKMFRE 307
K +N + G++ + P LK V GI ++ +G HN+YK FR+
Sbjct: 45 KMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRD 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,530
Number of Sequences: 5004
Number of extensions: 66279
Number of successful extensions: 203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -