Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0552
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888 128 6e-30
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 33 0.22
01_04_0055 + 15462137-15462324,15467316-15467421,15468589-154688... 32 0.51
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45... 31 0.68
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 31 1.2
08_02_0846 - 21811156-21811833,21811960-21812055,21812157-218122... 30 1.6
07_03_1590 + 27960241-27961104 30 1.6
11_06_0445 - 23679918-23680282,23680415-23683349 30 2.1
12_02_0713 + 22437458-22437651,22439100-22440612,22440755-22441282 29 2.7
12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629... 29 2.7
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 29 2.7
12_01_0801 + 7351171-7351198,7351383-7352020,7352098-7352559,735... 29 3.6
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654... 29 3.6
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 29 4.8
05_05_0209 - 23282848-23284110 29 4.8
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515 29 4.8
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 29 4.8
06_03_0975 - 26471438-26472109,26472189-26472284,26472372-264724... 28 6.3
12_01_0680 + 5797152-5797481,5797816-5798331,5798868-5798944,580... 28 8.4
04_04_1128 + 31103582-31103709,31105231-31105344,31105906-311064... 28 8.4
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 28 8.4
>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
Length = 433
Score = 128 bits (308), Expect = 6e-30
Identities = 61/87 (70%), Positives = 66/87 (75%)
Frame = -3
Query: 262 KKQFDNLYGCRESLLDGIKRATDIMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTEID 83
K +FDNLYGCR SL DG+ RATD+MIAGKV VV GYGDVGKGCA A K G RVIVTEID
Sbjct: 201 KSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEID 260
Query: 82 PINALQAAMEGFQVTTMEEAAEVGQIF 2
PI ALQA MEG QV T+E+ IF
Sbjct: 261 PICALQALMEGLQVLTLEDVVSEADIF 287
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = -1
Query: 396 TKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVNDSVTKS 256
+KY + + + G++EETTTGV LY+M G L PAINVNDSVTKS
Sbjct: 156 SKYRKMKERLVGVSEETTTGVKRLYQMQETGALLFPAINVNDSVTKS 202
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = -1
Query: 621 LNRIGSRGTMVQQ*HL*YXXXXXXXXXXXRNTHL-CLEGETDDEYIWCIEQTLIFPDGKP 445
L +G RG +V HL + + + +GET +EY WC E+ L + G
Sbjct: 39 LTALGRRGPLVLLQHLLHAGPRRRPPSPRDSAAVFAWKGETLEEYWWCTERCLDWGVGAG 98
Query: 444 LNMILDDGGDLTNLVH 397
++I+DDGGD T L+H
Sbjct: 99 PDLIVDDGGDATLLIH 114
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -3
Query: 706 KYAPAKILKGARIAGSLHMTVQTAVLIET 620
++ P++ KGARI+GSLH T+Q AVLIET
Sbjct: 10 EFGPSQPFKGARISGSLHRTIQAAVLIET 38
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 193 IMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTEIDP-INALQAAMEGFQVTTMEEA 23
+ + GK + G+G VG A+ KG G VI DP +A +A G ++ +ME+A
Sbjct: 206 VSLVGKTIAILGFGKVGSEVARRAKGLGMHVIAH--DPYASADRAHAIGVELVSMEDA 261
>01_04_0055 +
15462137-15462324,15467316-15467421,15468589-15468807,
15469826-15470172,15471365-15471428,15471519-15471624,
15471709-15471849,15473619-15473767,15473942-15474107,
15474216-15474259
Length = 509
Score = 31.9 bits (69), Expect = 0.51
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -3
Query: 214 GIKRATDIMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTE--IDPINALQAAMEGFQV 41
G K A +AG++ VV G G GK A K G RV+V + +L AA+ G +
Sbjct: 346 GSKDAAISPLAGRLVVVVGAGGAGKAIAYGAKEKGARVVVANRTYEKAVSLAAAVGGHAL 405
Query: 40 TTME 29
E
Sbjct: 406 RLAE 409
>08_01_0065 +
452383-452629,452733-452868,453049-453118,453237-453330,
453426-453639,453756-453897,454076-454246,454586-454780
Length = 422
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -3
Query: 244 LYGCRESLLDGIKRATDIMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIV 95
+ GC G R M AG V G G VG C Q K FG ++
Sbjct: 219 ILGCAVFTAYGALRHAAEMRAGDSVAVIGVGGVGSSCLQIAKAFGASEVI 268
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 187 IAGKVCVVAGYGDVGKGCAQAFKGFGGRVI 98
IAG+ V+ G+G+VG AQ GG+VI
Sbjct: 204 IAGQRFVIQGFGNVGSWAAQLISEAGGKVI 233
>08_02_0846 -
21811156-21811833,21811960-21812055,21812157-21812267,
21812367-21812743,21814699-21814734,21815236-21815839
Length = 633
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -3
Query: 193 IMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTEIDP-INALQAAMEGFQVTTMEEA 23
+ + GK V G+G VG A+ KG G VI DP A +A G ++ + +EA
Sbjct: 224 VSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGAELVSFDEA 279
>07_03_1590 + 27960241-27961104
Length = 287
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 187 IAGKVCVVAGYGD-VGKGCAQAFKGFGGRVIVTEIDPINALQAAME 53
+AGKV V+ G +GK A F G +VI+T+++ AA E
Sbjct: 24 LAGKVAVITGAASGIGKATAAEFIRNGAKVIITDVNDDLGHAAAAE 69
>11_06_0445 - 23679918-23680282,23680415-23683349
Length = 1099
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 519 CLEGETDDEYIWCIEQTLIFPDGKPLNMILDDGGDLTNLVHTKYPDLLKDV 367
C D Y + I + +P + I DG DL N V + +PD + D+
Sbjct: 984 CKVSAEGDVYSYGIIVLEMITGKQPTDEIFQDGMDLHNFVESAFPDQISDI 1034
>12_02_0713 + 22437458-22437651,22439100-22440612,22440755-22441282
Length = 744
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 522 LCLEGETDDEYIWCIEQTLIFPDGKPLNMILDDGGDLTNLVHT 394
LC+ DDEY+ C+++ L L++ L +G +NL+ T
Sbjct: 545 LCIHLTDDDEYLQCLKKALKIAMPTVLSIALGEGYPSSNLLAT 587
>12_02_0618 -
21262021-21262117,21262429-21262466,21262933-21262986,
21263274-21263438,21263523-21263759,21263857-21263918,
21264543-21264656,21264816-21264942,21266200-21266218,
21266338-21266428,21266932-21267094,21267182-21267330,
21268147-21268287,21268368-21268533,21268568-21268631,
21268729-21269084,21269759-21269977,21270328-21270433,
21270713-21270942
Length = 865
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = -3
Query: 238 GCRESLLDGIKRA-----TDIMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIV 95
G ++ DGI+ + T +AG++ VV G G GK A K G RV++
Sbjct: 370 GAISAIEDGIRASQPTDTTTSPLAGRLFVVIGAGGAGKALAYGAKEKGARVVI 422
>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 217 RAKTPYIHTSCRIAFCY*IVNVDCRNF*KSFSEHFIQIMYPGCSFF 354
R K PYIH ++ C + C N + + P CS+F
Sbjct: 1848 RGKCPYIHDRAKVTICTKFLKGLCSNTSCKLTHKVLPERMPDCSYF 1893
>12_01_0801 +
7351171-7351198,7351383-7352020,7352098-7352559,
7352641-7353105
Length = 530
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 95 NDHSTAKTFERLGASFSN--VTITCHYTNFPGNHYVCCPFDSVEQ 223
ND K F+R+G ++ N + + N PGNH PFD Q
Sbjct: 77 NDRLKRKAFQRMGKAWKNWKSKLFTEFVNPPGNH---TPFDEYPQ 118
>03_02_0985 -
12961787-12961984,12963177-12963337,12965332-12965489,
12966015-12966105,12966715-12966752,12966994-12967154,
12967249-12968687,12968815-12969227,12969630-12970987,
12971089-12971454,12971533-12971696,12971748-12971820,
12972967-12973113
Length = 1588
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 324 YKMFREGLLKVPAINVNDSVTKSNSTTCMDVGSLCSTE 211
Y+ E + + P+ N+S++++N +T G LC E
Sbjct: 123 YQQSAESMGQYPSTVANESISRNNGSTAPSSGDLCKRE 160
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 429 DDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKM 316
DD + +L H Y D +KD K E +HN KM
Sbjct: 448 DDDNFIISLDHKHYADHIKDHKADAEYLNKPIHNYSKM 485
>05_05_0209 - 23282848-23284110
Length = 420
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 208 KRATDIMIAGKVCVVAGYGDVGKGCAQA--FKGFGGRVIVTEIDPI 77
K A I + V V+GY D+GKG A FK G ++VT + +
Sbjct: 26 KEAIGITGSAIVAGVSGYKDIGKGAATTLLFKAGGFSLLVTFVSAV 71
>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
Length = 785
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +2
Query: 287 AGTFKSPSRNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKI 436
AG+ + P ++ + P+ +++ PF SF+ ++V + V SPP++ +
Sbjct: 98 AGSARLPYPDVKWAAVPPLAIAAGAPFASFRAERWIVVS--VSSPPTAAL 145
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 194 VCCPFDSVEQRLPTSIQVVELLFVTESLTLIAGT 295
+ C FD V QRL T++++V + + L L+A +
Sbjct: 1224 ISCAFDQVVQRLSTTVRMVAKDVLKDHLVLVANS 1257
>06_03_0975 -
26471438-26472109,26472189-26472284,26472372-26472482,
26472494-26472530,26472566-26472576,26472674-26473050,
26474310-26474895
Length = 629
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -3
Query: 193 IMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTE-IDPINALQAAMEGFQVTTMEEA 23
+ + GK + G+G VG A+ KG G +I + P++ +A G + + +EA
Sbjct: 206 VSLVGKTLAIMGFGKVGSEVARRAKGLGMDIISHDPYAPVDRARAI--GVDLVSFDEA 261
>12_01_0680 +
5797152-5797481,5797816-5798331,5798868-5798944,
5800706-5800778,5801689-5801786,5801868-5801964,
5802451-5802516,5802717-5802764,5803223-5803297,
5803913-5803970,5804553-5804611,5805098-5805160,
5805161-5805205,5805490-5805588,5805713-5805760,
5805884-5805931,5806008-5806064
Length = 618
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 429 DDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKM 316
DD + +L H Y D +KD K E +HN KM
Sbjct: 92 DDENFIISLDHKHYADHIKDHKADAEYLNKPIHNYGKM 129
>04_04_1128 +
31103582-31103709,31105231-31105344,31105906-31106446,
31106911-31107003,31107041-31107194,31107296-31107498
Length = 410
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -3
Query: 184 AGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTEIDPINALQA----AMEGFQVTT 35
AGK V G G +G + + FG RV V P+ +A +GF V+T
Sbjct: 202 AGKHVGVVGLGGLGHVAVKFARAFGMRVTVISTSPVKRQEALERLGADGFIVST 255
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 187 IAGKVCVVAGYGDVGKGCAQAFKGFGGRVI 98
I+G V+ G+G+VG A+ GG+VI
Sbjct: 204 ISGSTFVIQGFGNVGSWAARIIHEKGGKVI 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,521,772
Number of Sequences: 37544
Number of extensions: 424102
Number of successful extensions: 1284
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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