Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0552
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 2e-36
SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.) 98 5e-21
SB_37642| Best HMM Match : fn3 (HMM E-Value=0) 32 0.52
SB_20640| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_7810| Best HMM Match : RVT_1 (HMM E-Value=2.8026e-45) 29 3.7
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 4.9
SB_32965| Best HMM Match : Kazal_1 (HMM E-Value=3.4e-19) 29 4.9
SB_54764| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8) 28 8.5
>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 149 bits (361), Expect = 2e-36
Identities = 65/86 (75%), Positives = 76/86 (88%)
Frame = -1
Query: 513 EGETDDEYIWCIEQTLIFPDGKPLNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGV 334
+GETD+EYIWCIEQTL+F DG+PLNMILDDGGDLTNLVH KY L+ ++G++EETTTGV
Sbjct: 105 KGETDEEYIWCIEQTLVFKDGQPLNMILDDGGDLTNLVHEKYTQYLEGIRGLSEETTTGV 164
Query: 333 HNLYKMFREGLLKVPAINVNDSVTKS 256
HNLYKM +G LK+ AINVNDSVTKS
Sbjct: 165 HNLYKMMEKGKLKITAINVNDSVTKS 190
Score = 142 bits (345), Expect = 2e-34
Identities = 66/87 (75%), Positives = 75/87 (86%)
Frame = -3
Query: 262 KKQFDNLYGCRESLLDGIKRATDIMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTEID 83
K +FDNLYG RESL+DG+KRATDIM+AGKV VVAGYGDVGKG Q+ KGFG RV++TEID
Sbjct: 189 KSKFDNLYGIRESLVDGLKRATDIMLAGKVVVVAGYGDVGKGSVQSLKGFGSRVLITEID 248
Query: 82 PINALQAAMEGFQVTTMEEAAEVGQIF 2
PINALQAA EGF+VTTM+EAA IF
Sbjct: 249 PINALQAACEGFEVTTMDEAASQANIF 275
Score = 64.5 bits (150), Expect = 8e-11
Identities = 27/37 (72%), Positives = 31/37 (83%)
Frame = -2
Query: 620 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWK 510
L ELGAEVQWSS NI+STQD AAAA+ G+P+YAWK
Sbjct: 69 LTELGAEVQWSSCNIFSTQDHAAAAIAKTGVPVYAWK 105
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -3
Query: 706 KYAPAKILKGARIAGSLHMTVQTAVLIET 620
+Y P+K LKGARIAG LHMT+QTAVLIET
Sbjct: 40 EYGPSKPLKGARIAGCLHMTIQTAVLIET 68
>SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 98.3 bits (234), Expect = 5e-21
Identities = 43/91 (47%), Positives = 64/91 (70%)
Frame = -1
Query: 513 EGETDDEYIWCIEQTLIFPDGKPLNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGV 334
+GE+++++ WCIE+ + +P NM+LDDGGD T+L++ K+ +KGI EE+ TGV
Sbjct: 166 KGESEEDFWWCIEKCITSNGWQP-NMVLDDGGDATHLMYKKFNGTFNTLKGIVEESVTGV 224
Query: 333 HNLYKMFREGLLKVPAINVNDSVTKSNSTTC 241
H LY++ ++G L VPA+NVNDSVTK C
Sbjct: 225 HRLYQLSKQGKLTVPAMNVNDSVTKVGKGCC 255
Score = 62.1 bits (144), Expect = 4e-10
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Frame = -3
Query: 253 FDNLYGCRESLLDGIKRATDIMIAGKVCVVA-----GYGDVGKGCAQAFKGFGGRVIVTE 89
F+ L G E + G+ R + GK+ V A VGKGC A KG G V +TE
Sbjct: 210 FNTLKGIVEESVTGVHRLYQLSKQGKLTVPAMNVNDSVTKVGKGCCAALKGLGAIVYITE 269
Query: 88 IDPINALQAAMEGFQVTTMEEAAE 17
IDPI LQA M+GF+V +EE +
Sbjct: 270 IDPICGLQACMDGFRVVKIEEVCK 293
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = -2
Query: 620 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWK 510
L+ LGA+++W + NIYSTQ+E AAA+ G+ I+AWK
Sbjct: 130 LMALGAQIRWCACNIYSTQNEVAAAMAESGLSIFAWK 166
>SB_37642| Best HMM Match : fn3 (HMM E-Value=0)
Length = 500
Score = 31.9 bits (69), Expect = 0.52
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 459 PDGKPLNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFR 310
PDG+P+N+ D G LTNL T P + GI V+++ +F+
Sbjct: 388 PDGRPVNITTDKGTGLTNLAVTWAPMTTELENGIILGYHVNVYDMSGVFK 437
>SB_20640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 31.1 bits (67), Expect = 0.92
Identities = 24/86 (27%), Positives = 38/86 (44%)
Frame = +2
Query: 200 CPFDSVEQRLPTSIQVVELLFVTESLTLIAGTFKSPSRNILYKLCTPVVVSSVIPFTSFK 379
C + V + P+ + V F ES T+ + K P++ +YK+ T + + TSF
Sbjct: 53 CETNMVSKNFPSEVYTVSTNFPCESYTV---STKFPNK--IYKVSTNIPCETYTVSTSFL 107
Query: 380 RSGYLVWTKFVKSPPSSKIILRGFPS 457
Y V T F P + + FPS
Sbjct: 108 DEIYTVSTNF---PSETYTVFTNFPS 130
>SB_7810| Best HMM Match : RVT_1 (HMM E-Value=2.8026e-45)
Length = 732
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = -1
Query: 513 EGETDDEYIWCIEQTLIFPDGKPLNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGV 334
+GE ++ I + + F +G P +LD G ++++ + Y LK+ V
Sbjct: 187 QGEHEESLIGDANECITFVNGSPCLALLDTGSQISSISQSFYEKHLKNC------PLNSV 240
Query: 333 HNLYKMFREGLLKVPAI 283
NL K+ G +VP I
Sbjct: 241 DNLIKLVGAGGEQVPYI 257
>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1065
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +2
Query: 140 FSNVTITCHYTNFPGNHYVCCPFDSVEQRLPTSIQVVELLFVTESLTLIAGTFKSPSRNI 319
+ V + C+ F G +VCCP + +LP +VV + V E T I T +P +I
Sbjct: 655 YYGVLLPCNTGLFTGVEFVCCPVKKPDNKLPFE-KVVPAIEV-EVATPIPTT--APPASI 710
Query: 320 LYKL 331
+ KL
Sbjct: 711 IDKL 714
>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 293
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 516 GIDGYSYGNQCSCGLVLCTINVT 584
G DG +YGN+C G C N T
Sbjct: 57 GTDGKTYGNKCMLGAATCRSNGT 79
>SB_32965| Best HMM Match : Kazal_1 (HMM E-Value=3.4e-19)
Length = 69
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 516 GIDGYSYGNQCSCGLVLCTINVT 584
G DG +YGN+C G C N T
Sbjct: 37 GTDGKTYGNECMLGAATCHSNGT 59
>SB_54764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = -3
Query: 310 RRTFKSSCNQR*RFSNKKQFDNLYGCRESLLDGIKRATDIMIAGKVCVVAGY 155
R TF + Q S + F N GC + G T M A KVCV Y
Sbjct: 330 RETFSKT--QSVEISQQSFFANALGCVSGFIGGEPDCTLRMEASKVCVAISY 379
>SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8)
Length = 276
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 439 IERLSIREDQCLFNTPNILV 498
+ER+ IRE+QC +TPN V
Sbjct: 165 VERIRIRENQCQTSTPNCKV 184
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,609,727
Number of Sequences: 59808
Number of extensions: 491470
Number of successful extensions: 1178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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