Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0533
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 31 0.069
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.1
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 2.0
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 3.4
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 6.0
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 25 6.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 6.0
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 6.0
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 25 7.9
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 25 7.9
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 31.5 bits (68), Expect = 0.069
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 42 LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 209
L E + V D +S E K KH + + +KS + ++ K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169
Query: 210 LQGSKD 227
+ K+
Sbjct: 170 SKYIKE 175
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 51 QLYNSVVVADYDSAVEKSKHLYEEKKS 131
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 123 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 215
K+ +T+ NKL+ ++ + +YAY L LQ
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 380 TSPRVSWKLIALWENNKVYFKILNTERNHTWYWS 481
TSP +++ ++ + N+ L TE H W+WS
Sbjct: 483 TSPIITFFILPVQNNDNSALCAL-TEGGHAWFWS 515
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.0 bits (52), Expect = 6.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 117 EEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVESDLSS 269
E ++ VI + + L+++ MNC +YA Q W + RDC + S +S+
Sbjct: 1111 EMERDAVIGHGTSFLMQDRLMNCSDYA-QSW------VCRDCGSIISIMST 1154
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 6.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 433 DLVVLPQSD*LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVA 299
DLV+L D +PAD R + + S + N ++ SE ++
Sbjct: 140 DLVILQIGDRVPADLRIVEATELEIDESNLTGENSPRKKSSEAIS 184
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 6.0
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +1
Query: 19 IPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTP 198
+P + T S++TI+SS+P+T+ + + T +S + TT T ST
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STS 560
Query: 199 INFGSRAPRTSS 234
+ + S P TSS
Sbjct: 561 VPYTS-TPVTSS 571
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 6.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 296 KRDGLALTLSNDVQGDDGRPAYGD 367
K++G+ + ND G++G AY D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 86 VVIGDDDAIVKLLLQNVVRDVGICSIQ 6
VVIGD+ I K +L N V+ CSI+
Sbjct: 371 VVIGDNCRIGKAILANSVKIGNNCSIE 397
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 7.9
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 42 LEEQLYNSVVVADYDSAVEKSKHLYEE-KKSEVITNVVNKLIRNNKMN 182
LE L + +VA S++EKSK LY+ K ++ +VV R ++MN
Sbjct: 279 LEYMLEHGGLVALEASSIEKSKLLYDTLDKHDLYISVVEPAAR-SRMN 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,729
Number of Sequences: 5004
Number of extensions: 29148
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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