Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0533
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617     32   0.21 
04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674...    27   6.0  
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841     27   7.9  
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550...    27   7.9  
02_05_0491 + 29470575-29471351,29471574-29471806,29472697-294728...    27   7.9  
01_01_0061 + 483116-483757,483891-484046,484171-484262,484410-48...    27   7.9  

>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
          Length = 988

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +3

Query: 36  DILEEQLYNSVVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 209
           DIL E LY S  ++DY  D      ++L +  +   + N++ + ++NN+   +     +W
Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNRYFIV--IDDIW 294

Query: 210 LQGSKDIVRDCFPVESDLS 266
            + +  +++  FP  S+ S
Sbjct: 295 SKSAWQVIQCAFPYNSNAS 313


>04_04_0867 +
           28865857-28866657,28866778-28867113,28867248-28867451,
           28867567-28867746
          Length = 506

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 368 GKDKTSPRVSWKLIALWENNKVYFKILNTERNHT 469
           G+D T+  +SW L A+ +N +V  KI    R+ T
Sbjct: 304 GRDTTAGTLSWFLYAVCKNQRVQDKIAREVRDAT 337


>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +3

Query: 96  EKSKHLYEEK-KSEVITNV--VNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVESDLS 266
           +K++H    K K  V+ NV  +  L+ +N+M C E A+ +  +  K+IV     ++  ++
Sbjct: 62  KKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVT 121

Query: 267 SPKTRL 284
           +   RL
Sbjct: 122 NKLARL 127


>03_02_0081 -
           5506194-5506197,5506310-5507170,5507299-5507456,
           5507549-5507740
          Length = 404

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +2

Query: 341 DDGRPAYGD--GKDK--TSPRVSWKLIALWENNKVY 436
           DDGR  +G+  G ++   SP  SW L +LW+   V+
Sbjct: 233 DDGRWRHGEWRGAERFLASPPASWALASLWDCGGVF 268


>02_05_0491 +
           29470575-29471351,29471574-29471806,29472697-29472856,
           29473149-29473394,29473492-29473628,29473874-29474207,
           29474283-29474444,29474717-29474791,29474866-29474966,
           29475042-29475111,29475210-29475266,29475357-29475418,
           29475505-29475577,29475663-29475884
          Length = 902

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -3

Query: 367 VAVGRSAI-VALNIIAQRQSETVALVHKLNRVFGEDKSDSTGK 242
           +A GR  I VA+N +++R+S  +A +   NR+ GE+ S  T +
Sbjct: 49  LAPGRVPIAVAINEMSKRKSPALAALADGNRLAGEEASGITAR 91


>01_01_0061 +
           483116-483757,483891-484046,484171-484262,484410-485076
          Length = 518

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +3

Query: 219 SKDIVRDCFPVESDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQARESA 398
           S+ + R   P E + SSP +   LC+SAT S  R      +T   +P A  +  QA+++A
Sbjct: 225 SRAMSRRAPPKEEEPSSPSSDDELCSSATSSKKR-----PSTSTRVPEAMEQREQAQKAA 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,209,870
Number of Sequences: 37544
Number of extensions: 194441
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)