BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbVf0533 (483 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617 32 0.21 04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674... 27 6.0 09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 27 7.9 03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550... 27 7.9 02_05_0491 + 29470575-29471351,29471574-29471806,29472697-294728... 27 7.9 01_01_0061 + 483116-483757,483891-484046,484171-484262,484410-48... 27 7.9 >08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617 Length = 988 Score = 32.3 bits (70), Expect = 0.21 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Frame = +3 Query: 36 DILEEQLYNSVVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 209 DIL E LY S ++DY D ++L + + + N++ + ++NN+ + +W Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNRYFIV--IDDIW 294 Query: 210 LQGSKDIVRDCFPVESDLS 266 + + +++ FP S+ S Sbjct: 295 SKSAWQVIQCAFPYNSNAS 313 >04_04_0867 + 28865857-28866657,28866778-28867113,28867248-28867451, 28867567-28867746 Length = 506 Score = 27.5 bits (58), Expect = 6.0 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 368 GKDKTSPRVSWKLIALWENNKVYFKILNTERNHT 469 G+D T+ +SW L A+ +N +V KI R+ T Sbjct: 304 GRDTTAGTLSWFLYAVCKNQRVQDKIAREVRDAT 337 >09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 Length = 133 Score = 27.1 bits (57), Expect = 7.9 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Frame = +3 Query: 96 EKSKHLYEEK-KSEVITNV--VNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVESDLS 266 +K++H K K V+ NV + L+ +N+M C E A+ + + K+IV ++ ++ Sbjct: 62 KKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVT 121 Query: 267 SPKTRL 284 + RL Sbjct: 122 NKLARL 127 >03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456, 5507549-5507740 Length = 404 Score = 27.1 bits (57), Expect = 7.9 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Frame = +2 Query: 341 DDGRPAYGD--GKDK--TSPRVSWKLIALWENNKVY 436 DDGR +G+ G ++ SP SW L +LW+ V+ Sbjct: 233 DDGRWRHGEWRGAERFLASPPASWALASLWDCGGVF 268 >02_05_0491 + 29470575-29471351,29471574-29471806,29472697-29472856, 29473149-29473394,29473492-29473628,29473874-29474207, 29474283-29474444,29474717-29474791,29474866-29474966, 29475042-29475111,29475210-29475266,29475357-29475418, 29475505-29475577,29475663-29475884 Length = 902 Score = 27.1 bits (57), Expect = 7.9 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Frame = -3 Query: 367 VAVGRSAI-VALNIIAQRQSETVALVHKLNRVFGEDKSDSTGK 242 +A GR I VA+N +++R+S +A + NR+ GE+ S T + Sbjct: 49 LAPGRVPIAVAINEMSKRKSPALAALADGNRLAGEEASGITAR 91 >01_01_0061 + 483116-483757,483891-484046,484171-484262,484410-485076 Length = 518 Score = 27.1 bits (57), Expect = 7.9 Identities = 20/60 (33%), Positives = 31/60 (51%) Frame = +3 Query: 219 SKDIVRDCFPVESDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQARESA 398 S+ + R P E + SSP + LC+SAT S R +T +P A + QA+++A Sbjct: 225 SRAMSRRAPPKEEEPSSPSSDDELCSSATSSKKR-----PSTSTRVPEAMEQREQAQKAA 279 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,209,870 Number of Sequences: 37544 Number of extensions: 194441 Number of successful extensions: 620 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 613 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 620 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 987904180 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -