Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0533
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 28   4.6  
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)                   27   6.1  
SB_5215| Best HMM Match : DUF745 (HMM E-Value=1.6)                     27   6.1  
SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)                       27   8.1  
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)                     27   8.1  
SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 16  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 147
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 209 APGLQGHRPGLFPS*VRLIFAENAIKLMYK 298
           A GL  H+ GLF + V  IF +++ K +YK
Sbjct: 896 ATGLWVHKDGLFGNPVNTIFQDSSKKALYK 925


>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 156 KLIRNNKMNCMEYAYQLWLQGSKDIVRDCF 245
           +L  NN+M    +A+  WL+G +   R C+
Sbjct: 17  RLHNNNRMLICTFAHSTWLKGRQGSSRQCY 46


>SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)
          Length = 322

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +3

Query: 123 KKSEVITNVVNKLIRNNKMNCME------YAYQLWLQGSKDIVRD 239
           KK +   ++V  L + NK N +E         Q  LQGSKDIVR+
Sbjct: 207 KKKKAAISLVESLFQENKPNPIEEECENFLKEQSGLQGSKDIVRN 251


>SB_5215| Best HMM Match : DUF745 (HMM E-Value=1.6)
          Length = 171

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +3

Query: 48  EQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 227
           ++L  S + A  D A+EK KHL +    +++T    ++I+  ++  +E    +  Q SKD
Sbjct: 65  KELATSAISAAKDLAIEKGKHLIDRTSVKMLTPKNVEVIK--QITGLEPNTPVITQKSKD 122

Query: 228 IV 233
           I+
Sbjct: 123 IL 124


>SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)
          Length = 186

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 122 EEERSHHKCREQTDTKQQDELHGVRLSTLAPG 217
           +EERS    R   D  ++  +H VRL +  PG
Sbjct: 115 DEERSQSSVRHGPDLTEELAVHAVRLGSRLPG 146


>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
          Length = 720

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 271 GEDKSDSTGKQSRTMSLEPWSQS**AYSMQFILLFRISLFTTFVMTSLFFSSYK 110
           G+  +D  G  S+   L  W +   A S+++ LL     F T VM S F +SYK
Sbjct: 221 GKMFADCYGHSSKVNEL--WKKISPASSLEYELLLCNETFITGVMISKFHTSYK 272


>SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1821

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +3

Query: 105 KHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVESDLSSPKTRL 284
           +H    KK+ +  ++   L+R +    + YA QLW   +KD++R    ++   S  + R 
Sbjct: 702 RHSRSIKKTNIRRSMYLALVRPH----LGYATQLWAPQTKDLIRRVERIQRRASKNRERD 757

Query: 285 SLC 293
           S C
Sbjct: 758 SGC 760


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,819,677
Number of Sequences: 59808
Number of extensions: 226721
Number of successful extensions: 719
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)