Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0533
(483 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical p... 30 0.77
Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical p... 30 0.77
U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical pr... 29 1.8
U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 29 2.3
L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 27 5.4
Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 27 7.1
U39744-3|AAK18884.2| 563|Caenorhabditis elegans Hypothetical pr... 27 7.1
>Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical
protein ZK1320.12b protein.
Length = 497
Score = 30.3 bits (65), Expect = 0.77
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 78 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 188
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical
protein ZK1320.12a protein.
Length = 495
Score = 30.3 bits (65), Expect = 0.77
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 78 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 188
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical
protein T12A2.15b protein.
Length = 222
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 365 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 463
D KD+ +P VS KL+AL N +V+ K T +N
Sbjct: 120 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 152
>U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical
protein T12A2.15a protein.
Length = 713
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 365 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 463
D KD+ +P VS KL+AL N +V+ K T +N
Sbjct: 611 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 643
>Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical
protein F18A11.1 protein.
Length = 485
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 135 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVESD 260
++ V+++L N K+ C ++ QL IVR+C+ + S+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN 298
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 135 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVESD 260
++ V+++L N K+ C ++ QL IVR+C+ + S+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN 298
>L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna
polymerase kappa) homologprotein 1 protein.
Length = 518
Score = 27.5 bits (58), Expect = 5.4
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 75 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCFP 248
A Y S +K + EEK E I N + R K + ++ L+ S+D+ RDC
Sbjct: 29 ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87
Query: 249 VESD 260
++ D
Sbjct: 88 IDMD 91
>Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical
protein F36F2.3b protein.
Length = 363
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 52 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 150
SFT+ASS P T +R+++ S + + + + S
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 317
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
F36F2.3a protein.
Length = 1128
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 52 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 150
SFT+ASS P T +R+++ S + + + + S
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 1082
>U39744-3|AAK18884.2| 563|Caenorhabditis elegans Hypothetical
protein C03F11.3 protein.
Length = 563
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 178 ILLFRISLFTTFVMTSLFFSSYK 110
I LF +S FTT + L FS YK
Sbjct: 206 ISLFNVSPFTTVTVDQLLFSGYK 228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,402,279
Number of Sequences: 27780
Number of extensions: 164571
Number of successful extensions: 619
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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