Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0533
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45460.1 68418.m05585 expressed protein                             28   3.8  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    27   5.0  
At1g59077.1 68414.m06670 hypothetical protein                          27   5.0  
At1g58766.1 68414.m06659 hypothetical protein                          27   5.0  
At5g63450.1 68418.m07965 cytochrome P450, putative                     27   6.6  
At5g47690.1 68418.m05887 expressed protein                             27   8.8  

>At5g45460.1 68418.m05585 expressed protein
          Length = 703

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
 Frame = +3

Query: 9   YAADSDVPNDILEEQLYNSVVVADYDSAV----EKSKHLYEEKKSEVITNVVNKLIRNNK 176
           +A   ++P D   E+L   V   DYD ++      ++  Y+E K E I    ++  + N 
Sbjct: 611 WALRDNLPEDAEREKLVRYVTKVDYDQSLLMWHIATEFCYQEHKKETIPEGYDEQCKQNH 670

Query: 177 MNCMEYAYQLWLQGSKDIVRDCFPVESDL 263
           +   + +  L  Q     VR C+  E  +
Sbjct: 671 LRLHDVSPDLATQSD---VRGCWNWEDQI 696


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 42   LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 149
            LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 42  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 149
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 42  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 149
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 368 GKDKTSPRVSWKLIALWENNKVYFKILNTERN 463
           G+D TS  ++W    L +N+ V  KIL+  RN
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRN 337


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +3

Query: 36  DILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIR 167
           D+LE++ Y   V+       + +  +YE ++SEV+  + +K+++
Sbjct: 734 DMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILK 777


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,982,149
Number of Sequences: 28952
Number of extensions: 156110
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)