Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0517
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    81   1e-16
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    27   1.3  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    27   1.8  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   5.4  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   7.2  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 80.6 bits (190), Expect = 1e-16
 Identities = 35/59 (59%), Positives = 45/59 (76%)
 Frame = -1

Query: 252 IIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIV 76
           +I+T+ DVIHS  +PSLGIK D  P RLNQ +  I+R G+F+GQCSE+CG  HS +PIV
Sbjct: 173 LILTSGDVIHSWAVPSLGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPIV 231



 Score = 65.7 bits (153), Expect = 3e-12
 Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
 Frame = -2

Query: 452 YLLDELNNPLITLKSIGHQ*Y*RYEYSDL-----NNIEFDSYIIPSNEIKNNEFRLLDVD 288
           YLLDE+  P +T+K+IG Q +  YE +D        + FDSY++P  +++    R L+VD
Sbjct: 101 YLLDEVQKPSMTVKAIGRQWFWSYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQLEVD 160

Query: 287 NRIILPINNQIEL 249
           NR++LPI+ +I L
Sbjct: 161 NRLVLPIDTRIRL 173


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +1

Query: 241 CNYNSIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLRSEYSYLQYH 396
           C    +W+   +I  +S +NSR ++  +  DG++    + L+ S +   + H
Sbjct: 17  CGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPN-LMHSRFRIRKTH 67


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +1

Query: 241 CNYNSIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLRSEYSYLQYH 396
           C    +W+   +I  +S +NSR ++  +  DG++    + L+ S +   + H
Sbjct: 17  CGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPN-LMHSRFRIRKTH 67


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 262 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLRSE 375
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 284 DYLHLIVGIHYFLFHWMGLY 343
           D+  L++GIH F +H   LY
Sbjct: 398 DFWSLVIGIHVFGYHVYWLY 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,223
Number of Sequences: 5004
Number of extensions: 31655
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)