Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0517
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       103   7e-23
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       103   7e-23
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        84   6e-17
SB_46219| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_19857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_15583| Best HMM Match : WXG100 (HMM E-Value=2)                      28   3.1  
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         27   5.5  

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  103 bits (247), Expect = 7e-23
 Identities = 43/59 (72%), Positives = 52/59 (88%)
 Frame = -1

Query: 252 IIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIV 76
           ++ITA DVIHS  +P+L +K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIV
Sbjct: 162 VLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIV 220



 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 33/70 (47%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
 Frame = -2

Query: 452 YLLDELNNPLITLKSIGHQ*Y*RYEYSDLNN--IEFDSYIIPSNEIKNNEFRLLDVDNRI 279
           YL+DE+ +P +T+K++GHQ Y  YEYSD  +  +EFDSY++P+ ++   +FRLL+VDNR+
Sbjct: 93  YLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRL 152

Query: 278 ILPINNQIEL 249
           ++PIN  + +
Sbjct: 153 VVPINTHVRV 162


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  103 bits (247), Expect = 7e-23
 Identities = 43/59 (72%), Positives = 52/59 (88%)
 Frame = -1

Query: 252 IIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIV 76
           ++ITA DVIHS  +P+L +K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIV
Sbjct: 162 VLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIV 220



 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 33/70 (47%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
 Frame = -2

Query: 452 YLLDELNNPLITLKSIGHQ*Y*RYEYSDLNN--IEFDSYIIPSNEIKNNEFRLLDVDNRI 279
           YL+DE+ +P +T+K++GHQ Y  YEYSD  +  +EFDSY++P+ ++   +FRLL+VDNR+
Sbjct: 93  YLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRL 152

Query: 278 ILPINNQIEL 249
           ++PIN  + +
Sbjct: 153 VVPINTHVRV 162


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 33/70 (47%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
 Frame = -2

Query: 452 YLLDELNNPLITLKSIGHQ*Y*RYEYSDLNN--IEFDSYIIPSNEIKNNEFRLLDVDNRI 279
           YL+DE+ +P +T+K++GHQ Y  YEYSD  +  +EFDSY++P+ ++   +FRLL+VDNR+
Sbjct: 93  YLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRL 152

Query: 278 ILPINNQIEL 249
           ++PIN  + +
Sbjct: 153 VVPINTHVRV 162



 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = -1

Query: 252 IIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIF 130
           ++ITA DVIHS  +P+L +K+DA PGRLNQT FFI +   F
Sbjct: 162 VLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWSF 202


>SB_46219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 226 NYIGCCNYNSIWLFIGKIIRLSTSNSRNSLFFIS 327
           NY   CN+  IW   GK I L  S + NS+ FIS
Sbjct: 232 NYRRQCNFKFIWTANGK-IWLRESETSNSIGFIS 264


>SB_19857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 226 NYIGCCNYNSIWLFIGKIIRLSTSNSRNSLFFIS 327
           NY   CN+  IW   GK I L  S + NS+ FIS
Sbjct: 136 NYRRQCNFKFIWTANGK-IWLRESETSNSIGFIS 168


>SB_15583| Best HMM Match : WXG100 (HMM E-Value=2)
          Length = 279

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 226 NYIGCCNYNSIWLFIGKIIRLSTSNSRNSLFFIS 327
           NY   CN+  IW   GK I L  S + NS+ FIS
Sbjct: 232 NYRRQCNFKFIWTANGK-IWLRESETSNSIGFIS 264


>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 1414

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 383 YEYSDLNNIEFDSY-IIPSNEIKNNEFRLLDVDNRIILPIN 264
           Y  S LN I   S  ++  NEI  N  R LD+ NR   P+N
Sbjct: 554 YGLSALNVIRLSSPGVLYRNEIAGNSNRHLDLHNRQARPVN 594


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,429,273
Number of Sequences: 59808
Number of extensions: 183036
Number of successful extensions: 296
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)