Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0517
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...    27   6.4  
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 241 CNYNSIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLRSEYSYLQY 393
           C  + +WL   ++  +S +NSR S+  +  DG+I     + + S +   +Y
Sbjct: 17  CGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIR-KPVTVHSRFRAREY 66


>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical
           protein F54F2.1 protein.
          Length = 1226

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 186 ANPGRLNQTNFFINRPGIFFGQ 121
           A PG+ NQ   FI  PG+++ Q
Sbjct: 197 AVPGKKNQNRVFIGAPGVWYWQ 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,317,214
Number of Sequences: 27780
Number of extensions: 158515
Number of successful extensions: 272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)