Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0509
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   3.8  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.6  
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    25   6.6  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   8.8  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.8  

>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 98  RLLTRRNVNSFVESISRTTFLAFSVSCP 15
           RL+T   ++ F+ ++  +TF  F ++CP
Sbjct: 47  RLITVEKIDVFINAMVPSTFALFCMACP 74


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 310 GRFFSLVAVIGHKFFNGN*FITVYLEDQ*LMIKLMALNAFQTNVILVL 453
           G F +L A+I   F   + F++ +LED+ +M+  + L      + LVL
Sbjct: 351 GNFIALSALIVAPFILASSFLSRWLEDRHIMLGGLFLGILAVAIHLVL 398


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 201 IIKIILYCFSEHYLLYTG-QFSSPLW*FFWLL 293
           ++ IIL+  S HY  Y G  F   +W  F +L
Sbjct: 125 VLPIILFLMSTHYTHYNGWMFLVNIWALFMVL 156


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -1

Query: 146 TINMNSLSGAMSISCL----RLLTRRNVNSFVESISRTTFLAFSVSCPI 12
           T+ +N  S  MS+  +    R L RR ++ +   +S+TT ++  V CP+
Sbjct: 569 TLYLNCNSKPMSLGSMFEHYRKLARRLISHY---LSKTTLISLLVGCPV 614


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 84  SSQKSKT*DTHCTGQRIHINCYTEHIGL 167
           SS+K+K  DT     +   + YT+HIGL
Sbjct: 245 SSEKTKYLDTIAQDYKGSADSYTDHIGL 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,552
Number of Sequences: 5004
Number of extensions: 47120
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)