Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0509
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53948| Best HMM Match : Robl_LC7 (HMM E-Value=9.3e-25)              61   6e-10
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   3e-08
SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)              56   3e-08
SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)              56   3e-08
SB_13938| Best HMM Match : Robl_LC7 (HMM E-Value=2.5e-17)              50   1e-06
SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)                27   9.2  

>SB_53948| Best HMM Match : Robl_LC7 (HMM E-Value=9.3e-25)
          Length = 101

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 26/52 (50%), Positives = 40/52 (76%)
 Frame = +1

Query: 1   YAGLIGQLTEKARNVVREMDSTNELTFLRVRSRRHEILIAPDREFILIVIQN 156
           Y   I  +T+ AR+ VR++D  N+L FLR+RSR++EIL+AP+ ++ LIVIQ+
Sbjct: 45  YLSNIQSMTQMARSAVRDLDPLNDLKFLRIRSRKYEILVAPENDYTLIVIQS 96


>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/51 (49%), Positives = 34/51 (66%)
 Frame = +1

Query: 1   YAGLIGQLTEKARNVVREMDSTNELTFLRVRSRRHEILIAPDREFILIVIQ 153
           YA     L   A + VR+MD  NEL F+RVR+ + E ++APD E++LIVIQ
Sbjct: 150 YASEFAPLAHFAHSAVRDMDPQNELRFIRVRTNKMEFMVAPDNEYLLIVIQ 200


>SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
          Length = 160

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/52 (48%), Positives = 39/52 (75%)
 Frame = +1

Query: 1   YAGLIGQLTEKARNVVREMDSTNELTFLRVRSRRHEILIAPDREFILIVIQN 156
           YA     L + AR+ VR++D  N+L+ LRV+SR++EI+IAP  E++LIV+Q+
Sbjct: 106 YASNCHHLAKLARSTVRDIDPQNDLSILRVKSRKYEIIIAPYEEYMLIVVQS 157


>SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
          Length = 101

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/52 (48%), Positives = 39/52 (75%)
 Frame = +1

Query: 1   YAGLIGQLTEKARNVVREMDSTNELTFLRVRSRRHEILIAPDREFILIVIQN 156
           YA     L + AR+ VR++D  N+L+ LRV+SR++EI+IAP  E++LIV+Q+
Sbjct: 47  YASNCHHLAKLARSTVRDIDPQNDLSILRVKSRKYEIIIAPYEEYMLIVVQS 98


>SB_13938| Best HMM Match : Robl_LC7 (HMM E-Value=2.5e-17)
          Length = 111

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/46 (47%), Positives = 33/46 (71%)
 Frame = +1

Query: 22  LTEKARNVVREMDSTNELTFLRVRSRRHEILIAPDREFILIVIQNT 159
           L E AR  +R+ D  ++L F RVR+ +HE++IAP+ ++ LIVIQ T
Sbjct: 57  LVELARATIRDTDPEDDLRFFRVRTLKHELIIAPEDKYTLIVIQKT 102


>SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
 Frame = +1

Query: 1   YAGLIGQLTEKARNVVREMDSTNELTFLRVRSRRHEILIAPDR----EFILIVIQN 156
           YA +   L   AR  VR++D  ++L  LRVR++ HE++IAP+R     F ++ +Q+
Sbjct: 43  YANMCKNLASMARGTVRDVDPADDLLILRVRTKEHEVIIAPERTGDGTFFIVALQS 98


>SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)
          Length = 657

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 19  QLTEKARNVVREMDSTN-ELTFLRVRSRRHEILIAPDREFILIVIQNTSD*IFTYKKQ 189
           QL E+   + RE+D+   EL + +  +         D   + + +++T D +FTY+K+
Sbjct: 163 QLVEERDEMARELDNAKKELQYHKQTTEECATADDDDYAMLKLKLKSTKDELFTYQKR 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,148,303
Number of Sequences: 59808
Number of extensions: 297091
Number of successful extensions: 507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)