Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0509
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21530.1 68415.m02562 forkhead-associated domain-containing p...    28   5.7  
At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical ...    27   7.5  
At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical ...    27   7.5  
At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical ...    27   7.5  
At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR...    27   10.0 

>At2g21530.1 68415.m02562 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 209

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -1

Query: 164 SDVFCI--TINMNSLSGAMSISCLR 96
           S +FC     N N+L+GA+S++CLR
Sbjct: 21  SSLFCFYGNSNRNNLNGAVSVNCLR 45


>At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 453

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -3

Query: 408 FNHQLLIF*INSYKLISIKKLMTYNRYQ*KKSTTLNLFLRARKITIGGSRIVQ 250
           F   L  F   + ++++IK + + N+Y+      +++  R  +  +GGSR VQ
Sbjct: 112 FGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQ 164


>At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -3

Query: 408 FNHQLLIF*INSYKLISIKKLMTYNRYQ*KKSTTLNLFLRARKITIGGSRIVQ 250
           F   L  F   + ++++IK + + N+Y+      +++  R  +  +GGSR VQ
Sbjct: 126 FGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQ 178


>At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -3

Query: 408 FNHQLLIF*INSYKLISIKKLMTYNRYQ*KKSTTLNLFLRARKITIGGSRIVQ 250
           F   L  F   + ++++IK + + N+Y+      +++  R  +  +GGSR VQ
Sbjct: 126 FGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQ 178


>At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1163

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 170 SLLTKNSRLIYN*NY-LILFFRTLFIIYWTILEPPMVIFLALRNKFSVVDFFH 325
           S+  + SR I N  Y L++         W + E  MV+ L L+NK  VV  F+
Sbjct: 54  SISEEISRAIQNSTYALVILSENYASSSWCLDELRMVMDLHLKNKIKVVPIFY 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,489,134
Number of Sequences: 28952
Number of extensions: 216314
Number of successful extensions: 407
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)