Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0501
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   4.7  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   6.2  
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    25   6.2  

>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 275 IMSTSIISINCFLFHHYFRWIFFWAFLGISFYRHW 379
           I+S S+   +  L H YF   F   +   S +  W
Sbjct: 6   ILSCSVYDFSSILLHQYFTQFFVLRYASPSMHLDW 40


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 27  WEAHQRSRKGRSWRRTTFWCFVNWCIISALTL 122
           W  H++  K   WR  +FW F  +C I+A  L
Sbjct: 392 WINHEK--KIDLWRPFSFWLFSIFCTIAAYYL 421


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 120 RSGQKLYTS*QNTRTSYAANCDPSANVDGLPIKDLKIAN 4
           RS + L++S    R  Y  NC      DG   +DLK  N
Sbjct: 78  RSSEGLFSS---LRAEYKLNCSGKELFDGSVYRDLKSVN 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,366,394
Number of Sequences: 5004
Number of extensions: 21511
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)