Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0501
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0079 + 886004-886531                                             28   2.6  
01_05_0018 - 17208358-17208367,17208485-17208537,17209321-172093...    27   6.0  
01_03_0125 + 12739814-12740273,12740941-12740948                       27   8.0  

>04_01_0079 + 886004-886531
          Length = 175

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 155 AGYGGDEEEAATVADGEE 208
           +G G D+EEAATVA+G E
Sbjct: 7   SGDGRDDEEAATVAEGHE 24


>01_05_0018 -
           17208358-17208367,17208485-17208537,17209321-17209383,
           17209971-17210045,17210090-17210104,17210983-17211045,
           17211129-17211218,17211396-17211714,17211814-17211860,
           17211949-17212054,17212539-17212592,17212806-17212912,
           17212996-17213160,17213383-17213476,17213572-17213636,
           17213841-17213969
          Length = 484

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 238 TAPSTGARKVERHNEH*HNKHQLFLVPSLLQVDILLGLSR 357
           TAP TG R     N          LVPS+L  D+L G SR
Sbjct: 233 TAPVTGIRIQYPSNAELTKSDVSSLVPSILNQDLLYGPSR 272


>01_03_0125 + 12739814-12740273,12740941-12740948
          Length = 155

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = +2

Query: 170 DEEEAATVADGEE*VSKAAGRIPRLLLLGPVRWSGIMSTSIIS---INC 307
           D  EAA    G    S A    P  L LG   W  +  TS++S   +NC
Sbjct: 76  DAVEAAAGDSGSSCSSPATSASPCALPLGTWEWDRLAKTSVVSDWALNC 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,344,121
Number of Sequences: 37544
Number of extensions: 157560
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)