Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0501
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)                     28   3.6  
SB_58418| Best HMM Match : DUF1110 (HMM E-Value=3.7)                   28   3.6  
SB_47202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_11033| Best HMM Match : Chordopox_RPO7 (HMM E-Value=2.6)            27   6.2  
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    27   8.2  

>SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)
          Length = 1362

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 227 GRIPRLLLLGPVRWSGIMSTSIISINCFLFHHYFRWIFFWAFLGISFYRHWVLWIIWRVC 406
           G +P L  +  + W   M TS + +   LF  YF+    W F+  +   HW L  +W  C
Sbjct: 233 GDLPFLGFIFQMLWRTSMITSRV-VALVLFASYFQ---HWMFVAAA--AHWFLMALWLSC 286


>SB_58418| Best HMM Match : DUF1110 (HMM E-Value=3.7)
          Length = 474

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 292 NKHQLFLVPSLLQVDILLG-LSR-HLLLQALGT 384
           N H+  LVP + +VD L G LSR HL L+ L T
Sbjct: 26  NTHESNLVPDIARVDYLAGNLSRTHLRLEGLPT 58


>SB_47202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 232 YSTAPST-GARKVERHNEH*HNKHQ-LFLVPSLLQ 330
           + TAPS   ++K  R++EH +NKH   F+ P L Q
Sbjct: 5   HETAPSPFSSQKTTRNDEHINNKHACAFMSPKLKQ 39


>SB_11033| Best HMM Match : Chordopox_RPO7 (HMM E-Value=2.6)
          Length = 342

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 290 IISINCFLFHHYFRWIFFWAFLGISFYRHW 379
           +I +  +LF+ ++R  F   F+ IS++ +W
Sbjct: 270 VIMLGSYLFYAWWRPDFLLLFVAISYWNYW 299


>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 23  LMG-SPSTFAEGSQLAAYDVLVFCQLVYNFC 112
           L+G +P T A  ++LA+Y  L  C  +++FC
Sbjct: 194 LLGYNPETRARRNKLASYVALYSCYALFSFC 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,278,122
Number of Sequences: 59808
Number of extensions: 155592
Number of successful extensions: 383
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)