Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0501
         (417 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC127919-1|AAI27920.1|  108|Homo sapiens LOC646938 protein protein.    36   0.072
BC150505-1|AAI50506.1|   85|Homo sapiens LOC646938 protein protein.    30   3.6  
BC141940-1|AAI41941.1|   85|Homo sapiens LOC646938 protein protein.    30   3.6  
BC115373-1|AAI15374.1|  554|Homo sapiens transmembrane protein 8...    29   4.7  
AK027587-1|BAB55214.1|  555|Homo sapiens protein ( Homo sapiens ...    29   4.7  
AC093675-2|AAY24214.1|  526|Homo sapiens unknown protein.              29   4.7  

>BC127919-1|AAI27920.1|  108|Homo sapiens LOC646938 protein protein.
          Length = 108

 Score = 35.5 bits (78), Expect = 0.072
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 263 RWSGIMSTSIISINCFLFHHYFRWIFFWAFLGISF 367
           +W  +M T   S   FLFHH F W   W  + ISF
Sbjct: 19  KWPALMGTGRKSFGAFLFHHSFSW--GWKLISISF 51


>BC150505-1|AAI50506.1|   85|Homo sapiens LOC646938 protein protein.
          Length = 85

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 278 MSTSIISINCFLFHHYFRWIFFWAFLGISF 367
           M T   S   FLFHH F W   W  + ISF
Sbjct: 1   MGTGRKSFGAFLFHHSFSW--GWKLISISF 28


>BC141940-1|AAI41941.1|   85|Homo sapiens LOC646938 protein protein.
          Length = 85

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 278 MSTSIISINCFLFHHYFRWIFFWAFLGISF 367
           M T   S   FLFHH F W   W  + ISF
Sbjct: 1   MGTGRKSFGAFLFHHSFSW--GWKLISISF 28


>BC115373-1|AAI15374.1|  554|Homo sapiens transmembrane protein 87B
           protein.
          Length = 554

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +2

Query: 266 WSGIMSTSIISINCFLFHHYFRWIFFWAFLGISFYRHWVLWIIWRVCVW 412
           W+  +S S+I  + ++    +  + F+  + I +  + +LW+ W  C W
Sbjct: 193 WNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYW 241


>AK027587-1|BAB55214.1|  555|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14681 fis, clone NT2RP2004270, weakly similar to
           PROTEIN PTM1 PRECURSOR. ).
          Length = 555

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +2

Query: 266 WSGIMSTSIISINCFLFHHYFRWIFFWAFLGISFYRHWVLWIIWRVCVW 412
           W+  +S S+I  + ++    +  + F+  + I +  + +LW+ W  C W
Sbjct: 194 WNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYW 242


>AC093675-2|AAY24214.1|  526|Homo sapiens unknown protein.
          Length = 526

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +2

Query: 266 WSGIMSTSIISINCFLFHHYFRWIFFWAFLGISFYRHWVLWIIWRVCVW 412
           W+  +S S+I  + ++    +  + F+  + I +  + +LW+ W  C W
Sbjct: 194 WNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYW 242


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,547,058
Number of Sequences: 237096
Number of extensions: 854815
Number of successful extensions: 1669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)