Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0501
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93380-6|CAB07602.2|  339|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81587-13|CAB04710.2|  339|Caenorhabditis elegans Hypothetical p...    29   1.4  
AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF016432-8|AAB65377.1|  351|Caenorhabditis elegans Seven tm rece...    27   4.1  
Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z93380-4|CAB07597.1|  339|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z81089-5|CAD89731.2|  933|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z49937-1|CAA90184.2|  670|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z93380-6|CAB07602.2|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.7 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 229 TYSTAPSTGARKVERHNEH*HNKHQLFLVPSLLQVDILLGL 351
           TYS    T  R V  +    ++ HQ F+  SLL + +LL L
Sbjct: 124 TYSVFSLTSDRLVSHYKSKFYHTHQYFIAISLLVIQLLLTL 164


>Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical
           protein F10A3.5 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +2

Query: 254 GPVRWSGIMSTSIISINCFLFHHYFRWIFFWAFLGISFYRHWVLWIIWRVC 406
           G +  + + ST  + I     H Y+R++   + L   F+++  +W+I+  C
Sbjct: 91  GQLALATLCSTYGMMITMLAMHFYYRYLSVTSSLYRFFFKNLTIWVIFLTC 141


>Z81587-13|CAB04710.2|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.7 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 229 TYSTAPSTGARKVERHNEH*HNKHQLFLVPSLLQVDILLGL 351
           TYS    T  R V  +    ++ HQ F+  SLL + +LL L
Sbjct: 124 TYSVFSLTSDRLVSHYKSKFYHTHQYFIAISLLVIQLLLTL 164


>AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical
           protein R08F11.1 protein.
          Length = 884

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +2

Query: 170 DEEEAATVADGEE*VSKAAGRIPRLL---LLGPVRWSGI-MSTSIISINCFLFHHYFRWI 337
           D   A ++ADGE+   K+  RIP  +     G ++   + ++   I  N ++ H   RW 
Sbjct: 528 DNNIATSLADGEQMTIKSVDRIPHDMGHPTKGCIQEKRLSVADPWIHTNAYILHDTGRWK 587

Query: 338 FFWAFLGISFYRHWVL 385
                  IS YR W L
Sbjct: 588 DLNLKFVISCYRDWKL 603


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
            protein H11E01.3 protein.
          Length = 1464

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 241  APSTGARKVERHNEH*HNKHQLFLVPSLLQVDI 339
            APS  + +VE H+EH H + ++ +V +   +D+
Sbjct: 1057 APSPISSEVEAHSEHHHTQEEIPIVQTSEHIDL 1089


>AF016432-8|AAB65377.1|  351|Caenorhabditis elegans Seven tm
           receptor protein 227 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 242 LLLLGPVRWSGIMSTSIISINCFLFHHYFRWIFFWAFLGISFYRHWVLWIIWRVCVW 412
           LL+L    W G    S+     F  H  +RW+       +  +  W +WI + V +W
Sbjct: 91  LLILNSCYW-GCFGASMA---VFAVHFVYRWLVVTEHPLLETFNGWKIWIWFSVPMW 143


>Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical
           protein F28C12.2 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 229 TYSTAPSTGARKVERHNEH*HNKHQLFLVPSLLQVDILL 345
           TYS    T  R +  +    ++ HQ F+  SLL + +LL
Sbjct: 123 TYSVFSLTFDRLISHYKSRYYHMHQYFIATSLLVLQLLL 161


>Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical
           protein F14F3.3 protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 239 RLLLLGPVRWSG--IMSTSIISINCFLFHHYFRWIFFW-AFLGISFY 370
           R+L    +R  G  +++T  +  N +  HH++  I++W   L I FY
Sbjct: 391 RILYTHTIRCRGFEMLATGFLLKNAYDVHHFWSSIYYWLPLLCIPFY 437


>Z93380-4|CAB07597.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.5 protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 229 TYSTAPSTGARKVERHNEH*HNKHQLFLVPSLLQVDILLGL 351
           TYS       R V  +    ++ HQ F+  SLL + +LL L
Sbjct: 124 TYSVCSLAFDRLVSHYKSKFYHTHQYFIAVSLLVLQLLLTL 164


>Z81089-5|CAD89731.2|  933|Caenorhabditis elegans Hypothetical
           protein F53H4.6 protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 323 YFRWIFFWAFLGISFYRHWVLWII 394
           +F +  FW F    F+ +W LWII
Sbjct: 881 FFIYDIFWTFA--KFHENWQLWII 902


>Z49937-1|CAA90184.2|  670|Caenorhabditis elegans Hypothetical
           protein F14F3.2 protein.
          Length = 670

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 260 VRWSGIMSTSIISINCFLFHHY 325
           V W+ +   ++I   CF FH Y
Sbjct: 26  VEWASVKKGTVICSECFCFHSY 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,564,014
Number of Sequences: 27780
Number of extensions: 118762
Number of successful extensions: 365
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)