Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0501
         (417 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative...    28   2.9  
At4g04396.1 68417.m00632 hypothetical protein                          27   3.8  
At1g79920.2 68414.m09339 heat shock protein 70, putative / HSP70...    27   5.1  
At1g79920.1 68414.m09338 heat shock protein 70, putative / HSP70...    27   5.1  
At1g69470.1 68414.m07982 hypothetical protein                          26   8.9  

>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
           (UBP1) similar to GI:11993461
          Length = 1083

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 110 CPDLVQSSWRGR*TDAGYGGDEEEAATVADGE 205
           CPDL QSS     + A  G DEE A  VAD +
Sbjct: 498 CPDLEQSS-----SSANQGADEELALMVADSQ 524


>At4g04396.1 68417.m00632 hypothetical protein
          Length = 140

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 30  EAHQRSRKGRSWRRTTFWCFVNWCIISALTLYKVLG 137
           EA    +K R W+     CFV  C+I+   +Y + G
Sbjct: 94  EAELGKKKFRKWKVCLTMCFVWLCLITIAIVYVMFG 129


>At1g79920.2 68414.m09339 heat shock protein 70, putative / HSP70,
           putative contains Pfam profile: PF00012 Heat shock hsp70
           proteins; similar to heat-shock proteins GB:CAA94389,
           GB:AAD55461 [Arabidopsis thaliana]
          Length = 736

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 98  VYNFCPDLVQSSWRGR*TDAGYGGDEEEAATV 193
           V+   P  +  +W+G  TDA  GG E + +T+
Sbjct: 391 VHESFPFSISLAWKGAATDAQNGGTENQQSTI 422


>At1g79920.1 68414.m09338 heat shock protein 70, putative / HSP70,
           putative contains Pfam profile: PF00012 Heat shock hsp70
           proteins; similar to heat-shock proteins GB:CAA94389,
           GB:AAD55461 [Arabidopsis thaliana]
          Length = 736

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 98  VYNFCPDLVQSSWRGR*TDAGYGGDEEEAATV 193
           V+   P  +  +W+G  TDA  GG E + +T+
Sbjct: 391 VHESFPFSISLAWKGAATDAQNGGTENQQSTI 422


>At1g69470.1 68414.m07982 hypothetical protein
          Length = 140

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 176 EEAATVADGEE*VSKAAGRIPRLLLLG 256
           EE   V DGE  VSKA  R+  L+ LG
Sbjct: 91  EEIIEVLDGETGVSKAVSRVYDLVRLG 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,248,232
Number of Sequences: 28952
Number of extensions: 115932
Number of successful extensions: 342
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)