Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0486
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    28   1.6  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    27   2.2  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   2.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.6  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   8.8  

>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 282 LNKCSEL-FQNVKKEKCQDSTTDMGRGVICFGAFC*KHFFFAWH 410
           LN C EL F+NVKK        D+   + CF +   K  F+  H
Sbjct: 362 LNVCEELEFKNVKKSGYMQPLFDLTMPLGCFDSLETKEMFYLRH 405


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 299 IVPKCQKRKMSRLHNRYGKGCHLFRCILLKAFFFR 403
           I+P+C+K++ S  HN Y +  HL      +  FFR
Sbjct: 621 ILPRCEKKRRSVGHNSYKE--HLVLLTASRILFFR 653


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -1

Query: 338 GVLTFFF-FDILEQFTALVEYDLISRHIYLYDFVNSFCNVSINILLKSRNTLHI*IMLCK 162
           G +TFF+ F I   +  L    L+ + I L   VNS+ N ++  LL S   + I   + K
Sbjct: 299 GWMTFFYYFAISLAYMVLHTLVLLYQIITLNVTVNSYSN-AVLALLMSNQLVEIKGAVFK 357

Query: 161 KINK*SLVTITHSECI 114
           K  K +L  +T S+ +
Sbjct: 358 KFEKENLFQLTCSDVV 373


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 305 PKCQKRKMSR-LHNRYGKGCHLFRCILLKAFF 397
           P  QKR     LH   G    LFRC+LL  FF
Sbjct: 91  PLSQKRPFPNFLHPFTGSELSLFRCLLLFFFF 122


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/83 (24%), Positives = 36/83 (43%)
 Frame = -1

Query: 431 HGCFATKMPSEKKMLSTKCTETDDTPSHICCGVLTFFFFDILEQFTALVEYDLISRHIYL 252
           +   A  +  +K++ ++K  E+    S        FF    LE+  ALV     + H+ L
Sbjct: 221 YAILALAVSRDKRVDNSKLAESFFATSWFLIQRPGFFLTPQLEKIQALVIMIQFASHLSL 280

Query: 251 YDFVNSFCNVSINILLKSRNTLH 183
           Y+     C   + +++K  N LH
Sbjct: 281 YNLCKKLCG-QVCLMVKDLN-LH 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,424
Number of Sequences: 5004
Number of extensions: 69850
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)