Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0486
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)                  34   0.11 
SB_28924| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_24710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_8776| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       28   9.4  

>SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)
          Length = 1022

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 253 K*IWREIKSYSTSAVNCSKMSKKKNVKTPQQI 348
           K IW++IK +S S  N SK+ + K   TPQ++
Sbjct: 648 KSIWQKIKKHSPSTENISKLGRPKRTATPQKL 679


>SB_28924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 312 VKKEKCQDSTTDMGRGVICFGAFC 383
           V ++ C D+ +D+   V+C GA+C
Sbjct: 65  VLRQGCNDNASDLRASVVCSGAYC 88


>SB_24710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 546 DKNLNLAG-PISSLILFYVEPY*ADTAHSNK 457
           +K++NL    +SSL+L +VEPY A T  S K
Sbjct: 129 NKSVNLPRRSMSSLLLLFVEPYTAGTRDSEK 159


>SB_8776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 259 IWREIKSYSTSAVNCSKMSKKKNVKTPQQIWEG-VSSVSVHFVESI 393
           +W     +ST+A+N    S K+ V+ PQ+  +  V    +HFV S+
Sbjct: 74  VWVARTRFSTAAINPLDKSAKQFVEIPQKYLKNTVEQFVLHFVASL 119


>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 302 VPKCQKRKMSRLHNRYGKGCHL-FRCILLKAFFF 400
           + +CQ+  ++ +HN Y   CH+   C   K  F+
Sbjct: 93  INECQRDALAPIHNHYAHNCHVDAHCTNTKGSFY 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,324,966
Number of Sequences: 59808
Number of extensions: 485837
Number of successful extensions: 1093
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)