Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0486
         (752 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M11058-1|AAA52679.1|  888|Homo sapiens HMGCR protein.                  32   1.9  
BC033692-1|AAH33692.1|  835|Homo sapiens HMGCR protein protein.        32   1.9  
AY321356-1|AAP72015.1|  888|Homo sapiens 3-hydroxy-3-methylgluta...    32   1.9  
AF273765-1|AAG21343.1|  888|Homo sapiens 3-hydroxy-3-methylgluta...    32   1.9  
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    31   5.9  
BC084553-1|AAH84553.1|  371|Homo sapiens glutamate receptor, ion...    30   7.8  
BC041788-1|AAH41788.2|  371|Homo sapiens glutamate receptor, ion...    30   7.8  
AB097026-1|BAC77379.1|  371|Homo sapiens putative MAPK activatin...    30   7.8  

>M11058-1|AAA52679.1|  888|Homo sapiens HMGCR protein.
          Length = 888

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 391 IFFSLGIFVAKHPWQVIFGTL 453
           +F   G+FVA HPW+VI GT+
Sbjct: 5   LFRMHGLFVASHPWEVIVGTV 25


>BC033692-1|AAH33692.1|  835|Homo sapiens HMGCR protein protein.
          Length = 835

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 391 IFFSLGIFVAKHPWQVIFGTL 453
           +F   G+FVA HPW+VI GT+
Sbjct: 5   LFRMHGLFVASHPWEVIVGTV 25


>AY321356-1|AAP72015.1|  888|Homo sapiens
           3-hydroxy-3-methylglutaryl-Coenzyme A reductase protein.
          Length = 888

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 391 IFFSLGIFVAKHPWQVIFGTL 453
           +F   G+FVA HPW+VI GT+
Sbjct: 5   LFRMHGLFVASHPWEVIVGTV 25


>AF273765-1|AAG21343.1|  888|Homo sapiens
           3-hydroxy-3-methylglutaryl-coenzyme A reductase protein.
          Length = 888

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 391 IFFSLGIFVAKHPWQVIFGTL 453
           +F   G+FVA HPW+VI GT+
Sbjct: 5   LFRMHGLFVASHPWEVIVGTV 25


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +2

Query: 143 VIIYLFFYITLFRYVMCCDSLEVYLCLHYKNYLRNHTNKYG 265
           + +++F Y+ +F Y+  C  + +Y+ ++   Y+R   N +G
Sbjct: 73  IYLHIFIYLHIFIYICICLYIFIYVFIYINIYMRGLQNIHG 113


>BC084553-1|AAH84553.1|  371|Homo sapiens glutamate receptor,
           ionotropic, N-methyl D-asparate-associated protein 1
           (gluta protein.
          Length = 371

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 340 QQIWEGVSSVSVHFVESIFFSL-GIFVAKHPWQVIFGTLLFVTVS-CIGLI 486
           + +W    S +V F+  I  S  G F  KHPW ++  ++L  ++S  +G+I
Sbjct: 195 ENVWTYYVSYAVFFISLIVLSCCGDFRRKHPWNLVALSVLTASLSYMVGMI 245


>BC041788-1|AAH41788.2|  371|Homo sapiens glutamate receptor,
           ionotropic, N-methyl D-asparate-associated protein 1
           (gluta protein.
          Length = 371

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 340 QQIWEGVSSVSVHFVESIFFSL-GIFVAKHPWQVIFGTLLFVTVS-CIGLI 486
           + +W    S +V F+  I  S  G F  KHPW ++  ++L  ++S  +G+I
Sbjct: 195 ENVWTYYVSYAVFFISLIVLSCCGDFRRKHPWNLVALSVLTASLSYMVGMI 245


>AB097026-1|BAC77379.1|  371|Homo sapiens putative MAPK activating
           protein protein.
          Length = 371

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 340 QQIWEGVSSVSVHFVESIFFSL-GIFVAKHPWQVIFGTLLFVTVS-CIGLI 486
           + +W    S +V F+  I  S  G F  KHPW ++  ++L  ++S  +G+I
Sbjct: 195 ENVWTYYVSYAVFFISLIVLSCCGDFRRKHPWNLVALSVLTASLSYMVGMI 245


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,981,050
Number of Sequences: 237096
Number of extensions: 2454106
Number of successful extensions: 12029
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12025
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)