Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0486
         (752 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3987|AAM70800.1|  499|Drosophila melanogaster CG30427-P...    29   9.0  
AE013599-3986|AAF47295.2|  499|Drosophila melanogaster CG30427-P...    29   9.0  

>AE013599-3987|AAM70800.1|  499|Drosophila melanogaster CG30427-PD,
           isoform D protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 314 QKRKMSRLHNRYGKGCHLFRCILLKAFFFR---LASLWQSIH 430
           QKR M R+ NR   G  + +   ++A+FF+    +SLW  ++
Sbjct: 379 QKRFMIRVQNRISVGLEVLQFFTMRAWFFKSDAYSSLWAMLN 420


>AE013599-3986|AAF47295.2|  499|Drosophila melanogaster CG30427-PA,
           isoform A protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 314 QKRKMSRLHNRYGKGCHLFRCILLKAFFFR---LASLWQSIH 430
           QKR M R+ NR   G  + +   ++A+FF+    +SLW  ++
Sbjct: 379 QKRFMIRVQNRISVGLEVLQFFTMRAWFFKSDAYSSLWAMLN 420


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,389,122
Number of Sequences: 53049
Number of extensions: 718630
Number of successful extensions: 1635
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3437745267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)