Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0486
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    41   0.001
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    31   1.2  

>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 373 VHFVESIFFSLGIFVAKHPWQVIFGTLLFVT-VSCIGLIRFH 495
           VH ++  F+ +G FV  HP + I G LL VT VSC+G +RFH
Sbjct: 10  VH-MQKFFYKVGYFVGTHPRKCI-GVLLLVTLVSCLGFLRFH 49


>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
           protein ZK675.1 protein.
          Length = 1405

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 382 VESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIE 501
           ++ + F+LG  V ++ W +I    +   V C GL   HIE
Sbjct: 116 IQKLLFALGNTVHRNAWSIILAVSMIFAVCCYGLQYVHIE 155


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 379 FVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHI 498
           +++ +FF  GIFVAKH +  +   L    +S  GL    I
Sbjct: 13  WMQKVFFKYGIFVAKHQFWFLIVPLALTVLSIPGLFYLQI 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,712,120
Number of Sequences: 27780
Number of extensions: 396932
Number of successful extensions: 1112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)