Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0486
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    23   4.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   7.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   7.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   7.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   7.1  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   9.4  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   9.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 356 PSHICCGVLTFFFFDILEQFTAL 288
           PSHI  G+L  FFF    Q  AL
Sbjct: 638 PSHIMAGLLDKFFFPKWLQVLAL 660


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 708 RNGLISYLIFRALILS 661
           RNG ++YL+ R LILS
Sbjct: 170 RNGTVNYLMRRHLILS 185


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 708 RNGLISYLIFRALILS 661
           RNG ++YL+ R LILS
Sbjct: 170 RNGTVNYLMRRHLILS 185


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 708 RNGLISYLIFRALILS 661
           RNG ++YL+ R LILS
Sbjct: 221 RNGTVNYLMRRHLILS 236


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 708 RNGLISYLIFRALILS 661
           RNG ++YL+ R LILS
Sbjct: 170 RNGTVNYLMRRHLILS 185


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +3

Query: 450 IIICYCELYRLNTVPHRKESMNLWVPPDSDFYHDTNW 560
           ++I   ++  ++ +P  K  + LW  P  D     NW
Sbjct: 573 LVISEIQMVIVDVIPTDKNPVQLWYVPSLDQVWILNW 609


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 224 HYKNYLRNHTNKYGAKLNHTQQVQ*IVP 307
           +Y NY  N+  +    +NH +Q+   VP
Sbjct: 90  NYSNYNNNNYKQLCYNINHIEQIPVPVP 117


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 324 KCQDSTTDMGRGVICFGAFC*KH 392
           K  D  T +  G++ FGA+C  H
Sbjct: 405 KKYDCVTLLFSGIVGFGAYCAAH 427


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 224 HYKNYLRNHTNKYGAKLNHTQQV 292
           +Y NY  N+ N Y  KL +   +
Sbjct: 329 NYNNYNNNNYNNYNKKLYYKNYI 351


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 324 KCQDSTTDMGRGVICFGAFC*KH 392
           K  D  T +  G++ FGA+C  H
Sbjct: 405 KKYDCVTLLFSGIVGFGAYCAAH 427


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 522 VPPDSDFYHDTNWY 563
           VPPD     D NWY
Sbjct: 29  VPPDMLHLIDANWY 42


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 552 YRDKNLNLAGPISSLIL 502
           +RD  L+  GPI SL L
Sbjct: 93  WRDSRLSFLGPIKSLSL 109


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 212 YLCLHYKNYLRNHTNKYGAKLNH 280
           Y   +Y NY  N+ N Y    N+
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNN 111


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 212 YLCLHYKNYLRNHTNKYGAKLNH 280
           Y   +Y NY  N+ N Y    N+
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNN 111


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 9   CVHIVLGRDNISSKKRRALSACPCRSKQLA 98
           C H+ L    I+SK      ACP   K L+
Sbjct: 43  CSHLCLPAPRINSKSPLLSCACPDGLKLLS 72


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 9   CVHIVLGRDNISSKKRRALSACPCRSKQLA 98
           C H+ L    I+SK      ACP   K L+
Sbjct: 43  CSHLCLPAPRINSKSPLLSCACPDGLKLLS 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,439
Number of Sequences: 438
Number of extensions: 4734
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)