Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0486
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g42470.1 68414.m04897 patched family protein similar to SP|O1...    46   4e-05
At1g73590.1 68414.m08519 auxin efflux carrier protein, putative ...    31   0.62 
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR...    30   1.9  
At4g38350.1 68417.m05422 patched family protein similar to SP|O1...    29   2.5  
At5g65740.1 68418.m08273 expressed protein                             29   4.4  

>At1g42470.1 68414.m04897 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (GB:AAB63982) (GI:2276463); contains Pfam
           profile PF02460 Patched family
          Length = 1272

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 22/56 (39%), Positives = 35/56 (62%)
 Frame = +1

Query: 334 TPQQIWEGVSSVSVHFVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIE 501
           TPQ+ W  +S+V  H   + +   GI+VA+HP  V+  ++  V + C+GLIRF +E
Sbjct: 318 TPQRNWGQLSTVQGHLA-NFYGKYGIWVARHPTLVLCLSVSVVLLLCVGLIRFKVE 372


>At1g73590.1 68414.m08519 auxin efflux carrier protein, putative
           (PIN1) identical to putative auxin efflux carrier
           protein; AtPIN1 [Arabidopsis thaliana] GI:4151319;
           contains Pfam profile PF03547: Auxin Efflux Carrier
          Length = 622

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
 Frame = +1

Query: 259 IWREI----KSYSTS-AVNCSKMSKKKNVKTPQQIWEGVSSVSVHFVESIFFSLGIFVAK 423
           +WR++     SYS+   +  S +S K N++ P  I + +S +S   +    FSLG+F+A 
Sbjct: 469 VWRKLIRNPNSYSSLFGITWSLISFKWNIEMPALIAKSISILSDAGLGMAMFSLGLFMAL 528

Query: 424 HP 429
           +P
Sbjct: 529 NP 530


>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1007

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 155 LFFYITLFRYVMCCDSLEVYLC---LHYKNYLRNHTNKYGAKLNHTQQVQ*IV 304
           LF YIT+F    C D + + L    L+ +  L+N  N+Y   ++H Q+ + +V
Sbjct: 432 LFLYITVFFNYECADHVTLMLAKSNLNVRLGLKNLANRYLIHIDHDQKKRVVV 484


>At4g38350.1 68417.m05422 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (PID:g2276463); contains Pfam profile PF02460
           Patched family
          Length = 1064

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 379 FVESIFFSLGIFVAKHPWQVIFGTLLFVTVSCIGLIRFHIE 501
           ++   + S G ++A++P  V+F ++  V   C GL  F +E
Sbjct: 291 YMAKFYRSYGSWIARNPSLVLFMSVAIVLALCSGLYNFKVE 331


>At5g65740.1 68418.m08273 expressed protein 
          Length = 216

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -1

Query: 482 KPIQLTVTNNNVPKMTCHGCFATKMPSEKKMLSTKCTETDDTPSHICC 339
           KP+ L V ++   ++ C  C+A  +P+++++ +   T TD T  +I C
Sbjct: 126 KPLGLQVEDDQ-QQVECGICYAQFLPTDEELGARSGTRTDYTCENISC 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,106,229
Number of Sequences: 28952
Number of extensions: 341589
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)