Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0481
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...   167   2e-42
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   2.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.0  

>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score =  167 bits (405), Expect = 2e-42
 Identities = 78/78 (100%), Positives = 78/78 (100%)
 Frame = +1

Query: 256 IDCTHEIEQLEIEPVTSNDWEIAERNAAWLEENLLVQYRVATTERFIIYLPSGTFIQFQP 435
           IDCTHEIEQLEIEPVTSNDWEIAERNAAWLEENLLVQYRVATTERFIIYLPSGTFIQFQP
Sbjct: 83  IDCTHEIEQLEIEPVTSNDWEIAERNAAWLEENLLVQYRVATTERFIIYLPSGTFIQFQP 142

Query: 436 LKLIPSSLCGRLLRTTEV 489
           LKLIPSSLCGRLLRTTEV
Sbjct: 143 LKLIPSSLCGRLLRTTEV 160



 Score =  140 bits (339), Expect = 2e-34
 Identities = 65/70 (92%), Positives = 68/70 (97%)
 Frame = +2

Query: 2   CLVNVPELLLESISEPVQNYAVQAVVCKNDIKKTFYFGISGIPSQFSFEIDSTYAHTLKL 181
           CLVNVPELLLESISEPVQNYAVQAVVCKNDIKKTFYFGISGIPSQFSFEIDSTYAHTLKL
Sbjct: 13  CLVNVPELLLESISEPVQNYAVQAVVCKNDIKKTFYFGISGIPSQFSFEIDSTYAHTLKL 72

Query: 182 AENQEVKIFV 211
           AENQE+ + +
Sbjct: 73  AENQEINLSI 82



 Score = 81.8 bits (193), Expect = 7e-17
 Identities = 49/81 (60%), Positives = 53/81 (65%)
 Frame = +3

Query: 384 REIYYLSSFRYIYPIPTS*IDSQFFMRAPVTNY*SVDYSQTHTSAIEVKENRKVNLRCVV 563
           R I YL S  +I   P   I S    R   T    +   + +TSAIEVKENRKVNLRCVV
Sbjct: 127 RFIIYLPSGTFIQFQPLKLIPSSLCGRLLRTTEVLIT-PKPNTSAIEVKENRKVNLRCVV 185

Query: 564 ENRLLPDSVTADSPALCVCLP 626
           ENRLLPDSVTADSPALCV LP
Sbjct: 186 ENRLLPDSVTADSPALCVFLP 206


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 256 IDCTHEIEQLEIEPVTSNDWEIAERNAAWLEENLLVQYRVATTERFIIYLPSGTFI 423
           +D    + +LEIE + S  +   ++  AW    +L  + +    RF + LP   F+
Sbjct: 205 VDIFEYLNELEIETMPSPTYMDRQKELAWKMRGILTDWLIEVHSRFRL-LPETLFL 259


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 101  TFYFGISGIPSQFSFEIDSTYA-HT 172
            +F+ G  GIP   S E DSTY+ HT
Sbjct: 1518 SFFIGDFGIPLGDSVESDSTYSLHT 1542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,910
Number of Sequences: 5004
Number of extensions: 49436
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)