Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0481
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)                   29   4.1  
SB_47340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)             28   7.1  
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)           28   7.1  
SB_41970| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
          Length = 1456

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 377 LPPRDLLFIFLPVHLSNSNLLN*FPVLYAGA 469
           LPP DL F  LPVHL N  L+  FP+  A A
Sbjct: 518 LPPNDLFFPVLPVHL-NGKLV--FPLCAARA 545


>SB_47340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +2

Query: 377 LPPRDLLFIFLPVHL 421
           LPPRDL F  LPVHL
Sbjct: 118 LPPRDLYFPVLPVHL 132


>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
          Length = 1381

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = +2

Query: 377  LPPRDLLFIFLPVHLSNSNLLN*FPVLYAGACYEL 481
            LPPRDL F  LPV + NS L+  FP+     C EL
Sbjct: 1010 LPPRDLFFPVLPVRV-NSKLM--FPL--CARCAEL 1039


>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
          Length = 1336

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = +2

Query: 377  LPPRDLLFIFLPVHLSNSNLLN*FPVLYAGACYEL 481
            LPPRDL F  LPV + NS L+  FP+     C EL
Sbjct: 965  LPPRDLFFPVLPVRV-NSKLM--FPL--CAKCAEL 994


>SB_41970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 53  QNYAVQAVVCKNDIKKTFYFG-ISGIPSQFSFEIDSTYAHTLK 178
           Q   VQ +  K   KK  Y+  I   P Q   +ID T  HTLK
Sbjct: 7   QKVQVQVIEKKKTEKKRVYWSRIEPHPDQMEKKIDHTSRHTLK 49


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 377 LPPRDLLFIFLPVHLSNSNLLN*FPVLYAGACY 475
           LPPRDL F  LPV + N  L+  FP+ +  A +
Sbjct: 565 LPPRDLFFPILPVRV-NDKLM--FPLCHRCAAF 594


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,021,114
Number of Sequences: 59808
Number of extensions: 316599
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)