Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0481
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical pr...    38   0.008
AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.    38   0.008
AF025457-7|AAB70967.1|  431|Caenorhabditis elegans Hypothetical ...    28   4.8  
AY323527-1|AAP78770.1|  563|Caenorhabditis elegans grainyhead tr...    28   6.3  
AC024797-1|AAF60703.3|  563|Caenorhabditis elegans Grainyhead (d...    28   6.3  

>Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical
           protein C11H1.4a protein.
          Length = 996

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +1

Query: 253 KIDCTHEIEQLEIEPVTSNDWEIAERNAAWLEENLLVQYRVATTERFII-YLPSGTFIQF 429
           K  C+H    +E+ P T +D+ +  ++ + +E   L Q R+ +    I  +L  G ++QF
Sbjct: 99  KTYCSH----IEVAPRTEDDYSVIAQSQSSIENEFLNQIRLVSQNMIIPHFLSPGVYVQF 154

Query: 430 QPLKLIPSS 456
           + L ++P+S
Sbjct: 155 RILNIVPAS 163


>AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.
          Length = 996

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +1

Query: 253 KIDCTHEIEQLEIEPVTSNDWEIAERNAAWLEENLLVQYRVATTERFII-YLPSGTFIQF 429
           K  C+H    +E+ P T +D+ +  ++ + +E   L Q R+ +    I  +L  G ++QF
Sbjct: 99  KTYCSH----IEVAPRTEDDYSVIAQSQSSIENEFLNQIRLVSQNMIIPHFLSPGVYVQF 154

Query: 430 QPLKLIPSS 456
           + L ++P+S
Sbjct: 155 RILNIVPAS 163


>AF025457-7|AAB70967.1|  431|Caenorhabditis elegans Hypothetical
           protein C08E3.8 protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 346 EENLLVQYRVATTERFIIYLPSGTFIQFQPLKLIPSSLCGRLLRTTE 486
           +E+L + Y    +   I Y P+ T  Q+ P +  P+  CGR +RT++
Sbjct: 123 DEHLAITYN---SRHKIKYRPNDT-AQYSPFRQEPTCTCGRRIRTSD 165


>AY323527-1|AAP78770.1|  563|Caenorhabditis elegans grainyhead
           transcription factor protein.
          Length = 563

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 370 RVATTERFIIYLPSGTFIQFQPLKLIPSSLCGRLL 474
           R  T+ER ++Y+       +QPL ++P+SL G  L
Sbjct: 457 RPRTSERIMLYVRKRDEQIYQPLHVVPASLSGLAL 491


>AC024797-1|AAF60703.3|  563|Caenorhabditis elegans Grainyhead
           (drosophila transcriptionfactor) homolog protein 1
           protein.
          Length = 563

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 370 RVATTERFIIYLPSGTFIQFQPLKLIPSSLCGRLL 474
           R  T+ER ++Y+       +QPL ++P+SL G  L
Sbjct: 457 RPRTSERIMLYVRKRDEQIYQPLHVVPASLSGLAL 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,128,266
Number of Sequences: 27780
Number of extensions: 262002
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)