Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0481
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id...    45   5e-05
At5g34910.1 68418.m04116 hypothetical protein                          28   4.4  

>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
           identical to peroxisome biogenesis protein PEX1
           [Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
           Pfam profile PF00004: ATPase, AAA family; identical to
           cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
           partial cds GI:12006271
          Length = 1130

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +1

Query: 289 IEPVTSNDWEIAERNAAWLEENLLVQYRVA-TTERFIIYLPSGTFIQFQPLKLIPSSLCG 465
           +EP T +DWE+ E NA   E  +L Q R+   T +F ++L   T I+F  +   PS    
Sbjct: 111 VEPETEDDWEVLELNAELAEAAILSQVRILHETMKFPLWLHDRTVIRFSVVSTFPSKGVV 170

Query: 466 RLLRTTEV 489
           +L+  TEV
Sbjct: 171 QLVPGTEV 178


>At5g34910.1 68418.m04116 hypothetical protein
          Length = 203

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +1

Query: 265 THEIEQLEIEPVTSNDWEIAERNAAWLEENLLVQYRVATTERFIIYL 405
           T  + QL+ E +    +E+ E+NA   EEN   Q R+A+ E+ ++++
Sbjct: 94  TSTVAQLQ-EQLHLKIFELEEQNAKRNEENHQSQSRIASLEKLVLFM 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,147,353
Number of Sequences: 28952
Number of extensions: 237704
Number of successful extensions: 466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)