Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0468
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   0.82 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   3.3  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   5.8  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 445 KNYNLENLHEPSCAMSRVMKHSKCVTIDFYS 537
           KN   + +HEP  A  +V + +KC+    YS
Sbjct: 450 KNMPSQYIHEPWTAPEQVQRAAKCIIGKDYS 480


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 349 TGNLMKIFVMATENFS 302
           +G +MK   +ATENFS
Sbjct: 265 SGQVMKYAALATENFS 280


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 85  YNLLYICNIVTGINA 41
           YN+LY C I+  +N+
Sbjct: 330 YNILYFCRIMVYLNS 344


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 76  VDYIHIMVYVLDVKKGGVQSPN 141
           VD I++M Y   +  GG+ + N
Sbjct: 196 VDVINLMTYDFHIPGGGIAAEN 217


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 183 YTKYDVLQL*KKKHY 227
           YT++ +L+L K+ HY
Sbjct: 240 YTRHQILELEKEFHY 254


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 183 YTKYDVLQL*KKKHY 227
           YT++ +L+L K+ HY
Sbjct: 240 YTRHQILELEKEFHY 254


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 183 YTKYDVLQL*KKKHY 227
           YT++ +L+L K+ HY
Sbjct: 240 YTRHQILELEKEFHY 254


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,109
Number of Sequences: 336
Number of extensions: 3028
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)