Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0468
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   2.1  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   3.6  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 473 NLRVQCHGS*NIRNASQLIFIHLCLHVRVITIELQSTIC*LYLFFRP 613
           N  + C+ + + RNAS +I+  +   +   T+ + S IC   +FF P
Sbjct: 304 NQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLITSAICMFTIFFVP 350


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +1

Query: 442 KKNYNLENLHEPSCAMSRVMKHSKCVTIDFYSSLFTRTGNYY*IAINDMLIIFIFSSADR 621
           + ++N+E L   S  +S  +  ++C + D  + +F+R   Y   A        +  + DR
Sbjct: 353 RPSFNMEELELLSEVLSTFLSFNECASQDKKNCVFSRVTKYIKAARRASTANRVSVAKDR 412

Query: 622 *ALTP 636
            +LTP
Sbjct: 413 LSLTP 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,666
Number of Sequences: 5004
Number of extensions: 47562
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)