Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0468
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09)                 29   5.0  
SB_16769| Best HMM Match : DUF1690 (HMM E-Value=0.17)                  29   5.0  

>SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09)
          Length = 330

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 295 IVAKYTICDCFFLPISSCMFICQ*C 221
           +VA + +C+CF+L  ++C F+   C
Sbjct: 264 VVAIFLVCNCFYLIWNACAFVVPGC 288


>SB_16769| Best HMM Match : DUF1690 (HMM E-Value=0.17)
          Length = 837

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 16 LGQIFKGKMR*FPLLCYKCTVDY 84
          +G+IF+ ++R FP L   CT+D+
Sbjct: 3  IGEIFRARLRQFPSLVNCCTIDW 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,237,779
Number of Sequences: 59808
Number of extensions: 338441
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)