Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0468
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              24   1.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.9  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   5.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.1  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 367 SQ*ANHTGNLMKIFVMATENFSLSIVAKYTICDC 266
           SQ  + TG+    FV  T +F+ ++ A++ + DC
Sbjct: 90  SQWEDVTGSTPLTFVNDTVSFTTTVSARFWLMDC 123


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 445 KNYNLENLHEPSCAMSRVMKHSKCVTIDFYS 537
           KN+    +HEP  A   V + +KC+    YS
Sbjct: 454 KNFPTRYIHEPWNAPLNVQRAAKCIIGKDYS 484


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 457 LENLHEPSCAMSRVMKHS 510
           L +LH P+C ++R + H+
Sbjct: 397 LSDLHHPNCKINRKVHHT 414


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 183 YTKYDVLQL*KKKHY 227
           YT+Y  L+L K+ HY
Sbjct: 15  YTRYQTLELEKEFHY 29


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 352 GSLTETINILP*TFQEYNALI*LNNTDSKEKKNYNLENLHEPSCAMSRVMKH 507
           GS +   ++L    +E    I   N+D  + +  ++EN    SC  S + K+
Sbjct: 149 GSNSSNSDVLFKQNKEEEQTINRKNSDYLDNQEVSMENTENKSCTDSDIEKY 200


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 183 YTKYDVLQL*KKKHY 227
           YT+Y  L+L K+ HY
Sbjct: 277 YTRYQTLELEKEFHY 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,803
Number of Sequences: 438
Number of extensions: 3936
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)