Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0429
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...   111   8e-26
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    30   0.43 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    30   0.43 
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    27   2.3  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   2.3  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    27   4.0  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   5.2  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   6.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.9  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   9.2  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   9.2  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score =  111 bits (268), Expect = 8e-26
 Identities = 52/86 (60%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
 Frame = +3

Query: 510 YGPSLMPGGHPAAWPHIKEIFQAICAKA-NDEPCCDWVGEDGAGHFVKMVHMELNMVICN 686
           YGPSLMPGG+PAAWP IK IFQ + AKA N+EPCCDWVGE GAGH+VKMVH  +      
Sbjct: 140 YGPSLMPGGNPAAWPRIKPIFQTLAAKAGNNEPCCDWVGEQGAGHYVKMVHNGIEYGDMQ 199

Query: 687 L-SATYHLMKDVIGIEQDEMAKVFDE 761
           L   TY +MK  +G+  DE+A VF++
Sbjct: 200 LICETYDIMKRGLGMSCDEIADVFEK 225



 Score =  107 bits (256), Expect = 2e-24
 Identities = 51/81 (62%), Positives = 63/81 (77%)
 Frame = +1

Query: 265 ATSLDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCK 444
           A SL++ VSKLK+PR  +LLVKAG  VD  ++ L PLL KGDII+DGGNS Y DT + C+
Sbjct: 58  AHSLEEFVSKLKKPRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCE 117

Query: 445 ELSGTGILYVGMGVSGGEDGA 507
           EL+  GIL+VG GVSGGE+GA
Sbjct: 118 ELAKKGILFVGSGVSGGEEGA 138



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 38/57 (66%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
 Frame = +2

Query: 98  MPQNE-ADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTK*LG 265
           M Q E AD  LIGLAVMGQNLILN  DKG+ VC +NRT S+V+EFL NEAKG   +G
Sbjct: 1   MSQKEVADFGLIGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLANEAKGKSIVG 57


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 107  NEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSK 217
            N   + L+ +  + Q+++L +N+KG +VC+ N T  K
Sbjct: 1241 NMVTLVLVPMMSLRQDMMLRVNEKGLLVCSGNWTAFK 1277


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 107  NEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSK 217
            N   + L+ +  + Q+++L +N+KG +VC+ N T  K
Sbjct: 1241 NMVTLVLVPMMSLRQDMMLRVNEKGLLVCSGNWTAFK 1277


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 392 ISPLLKSGISFFTNSST-ANPAFTKRTIFLGLFSLDTMSSKEVAPITLYP*LHFLEIPLP 216
           ISP L    + F++S+  + P      ++  L  LD+ S  E   ++L   +   ++PLP
Sbjct: 106 ISPYLLQKYNTFSSSNPKSRPTLPPGILYAKLKLLDSFSDSEKKRLSLVSFIQTKKVPLP 165

Query: 215 LT 210
            T
Sbjct: 166 FT 167


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 127 ECNISFILRHFFKLDFKSLSNY 62
           +C I FI  H++ +DF +L +Y
Sbjct: 422 DCKIDFIACHWYGIDFSNLQDY 443


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 365 SFFTNSSTANPAFTKRTIFLGLFSLDTMSSKEVA 264
           S FT SS+ N A +    FLG  S + + S+EVA
Sbjct: 210 SLFTVSSSINRATSGALNFLGTASAEPLPSEEVA 243


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 127 ECNISFILRHFFKLDFKSLSNYFKQ 53
           ECN +  ++ F K DF  + ++F+Q
Sbjct: 266 ECNFNHNIKEFSKCDFTQMFHHFEQ 290


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 407 PPSIIISPLLKSGISFFTNSSTANPAFTKRT 315
           PPS    PL  S  S  TNSS A+    +RT
Sbjct: 325 PPSSATGPLYHSPQSSLTNSSVASADVQERT 355


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 107 NEADIAL-IGLAVMGQNLILNMNDK 178
           N  D+ L IGL  MG  LILNM D+
Sbjct: 402 NMHDLTLSIGLQTMGARLILNMVDR 426


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 686 VAYHHIQFHVHHFDKMACSIFTDPVTARFIISFSAYGLENFFYMRP 549
           V YH I     +FDK    +  +     F +   AY  +N+F+MRP
Sbjct: 371 VDYHGIASFFDNFDKKINKLPREE-DILFGLQILAYTSKNYFHMRP 415


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 145 HNSQTYECNISFILRHFFKLDFKSLSNYFKQ 53
           H+S TY   ++ I R F   + KS+S  F Q
Sbjct: 488 HSSGTYRLRVTTISRSFITGNAKSISESFDQ 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,726
Number of Sequences: 5004
Number of extensions: 71037
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)