Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0429
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0333 + 16474011-16475478,16475622-16475641 88 6e-18
06_01_0080 + 644021-645463 80 2e-15
01_06_0663 - 30991390-30992340 34 0.11
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 33 0.25
12_01_0958 + 9542399-9542522,9542600-9542646 30 1.8
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 30 1.8
04_04_1508 - 34072409-34072760,34073044-34073201 30 2.4
03_05_0556 - 25564025-25564274,25565244-25565470 29 3.1
10_08_0206 + 15809261-15809390,15810655-15810763,15811237-158112... 28 9.5
06_03_1062 - 27293119-27293313,27293390-27293548,27293877-272941... 28 9.5
>11_04_0333 + 16474011-16475478,16475622-16475641
Length = 495
Score = 88.2 bits (209), Expect = 6e-18
Identities = 41/74 (55%), Positives = 53/74 (71%)
Frame = +1
Query: 286 VSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGI 465
V L RPR +VLLV+AG AVD + L+P L GD I+DGGN Y +T++ +E + GI
Sbjct: 82 VLSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGI 141
Query: 466 LYVGMGVSGGEDGA 507
LY+GMGVSGGE+GA
Sbjct: 142 LYLGMGVSGGEEGA 155
Score = 69.3 bits (162), Expect = 3e-12
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +3
Query: 513 GPSLMPGGHPAAWPHIKEIFQAICAKANDEPCCDWVGEDGAGHFVKMVHMELNMVICNLS 692
GPSLMPGGH A+ +I++I + A+ D C +VG GAG+FVKMVH + L
Sbjct: 158 GPSLMPGGHIDAYNNIRDILEKAAAQTEDGACVTFVGPGGAGNFVKMVHNGIEYGDMQLI 217
Query: 693 A-TYHLMKDVIGIEQDEMAKVFDE 761
A Y +++ V G+ E+A VF E
Sbjct: 218 AEAYDVLRRVGGLSNSEIADVFAE 241
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 119 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFL-KNEAKG 250
I L GLA MGQNL LN+ +KG+ + +NRT +KV+ + + EA+G
Sbjct: 24 IGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEG 68
>06_01_0080 + 644021-645463
Length = 480
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/74 (48%), Positives = 53/74 (71%)
Frame = +1
Query: 286 VSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGI 465
V+ +++PR +++LVKAG VD+ + L L +GD IIDGGN Y +T++ K + G+
Sbjct: 64 VNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEERGL 123
Query: 466 LYVGMGVSGGEDGA 507
LY+GMGVSGGE+GA
Sbjct: 124 LYLGMGVSGGEEGA 137
Score = 63.7 bits (148), Expect = 2e-10
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Frame = +3
Query: 513 GPSLMPGGHPAAWPHIKEIFQAICAKANDE-PCCDWVGEDGAGHFVKMVHMELNMVICNL 689
GPSLMPGG A+ +I++I + A+ D PC ++G+ G+G+FVKMVH + L
Sbjct: 140 GPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSGNFVKMVHNGIEYGDMQL 199
Query: 690 -SATYHLMKDVIGIEQDEMAKVFDE*TK 770
S Y ++K V + E+ +VF E K
Sbjct: 200 ISEAYDVLKSVGKLTNSELQQVFSEWNK 227
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +2
Query: 119 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEE 226
I L GLAVMGQNL LN+ +KG+ + +NRT SKV+E
Sbjct: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE 41
>01_06_0663 - 30991390-30992340
Length = 316
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 119 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEA 244
+A +G VMGQ++ ++ GY + +NRT SK E + A
Sbjct: 22 VAWVGTGVMGQSMAGHLLAAGYALTVYNRTASKAEGLVSRGA 63
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 116 DIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKV 220
++ +GL +MG+ + N+ G+ V +NRT+SKV
Sbjct: 2 EVGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKV 36
>12_01_0958 + 9542399-9542522,9542600-9542646
Length = 56
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 473 LEWV*VEVKMVHIWTIFDAWWASCCMAA 556
+ W V + ++W + D W A CC+AA
Sbjct: 3 MPWETVACILRNVWALLDGWIAVCCLAA 30
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 119 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAK 247
+ +GL +MG + N+ + G V +NRT SK + L AK
Sbjct: 53 VGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAK 95
>04_04_1508 - 34072409-34072760,34073044-34073201
Length = 169
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 294 FRYHVIQGGSPNH-FVPLASFFRNSSTFDTV 205
F +H + G+PN V +AS RNSSTF V
Sbjct: 31 FYFHEVDAGTPNATVVNVASLHRNSSTFGDV 61
>03_05_0556 - 25564025-25564274,25565244-25565470
Length = 158
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 449 NSLHHFCVSKYCELPPSIIISPLLKSGISFFTNSSTAN-PAFTKRTIFLG 303
NS H + LPP PLL + FFT+S++ P F KR + G
Sbjct: 28 NSSHPCKADEGSRLPPGSRGLPLLGESLEFFTSSTSLELPVFFKRRLNRG 77
>10_08_0206 +
15809261-15809390,15810655-15810763,15811237-15811265,
15811721-15813048
Length = 531
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 392 ISPLLKSGISFFTNSSTANPAFTKRTIFLGLFSLDTMSSKEVAP 261
IS +++SG++ +TN + +NP + L L SS E+ P
Sbjct: 282 ISKVIESGLTSYTNRTVSNPGNADHILHLCHELLKPTSSAEMPP 325
>06_03_1062 -
27293119-27293313,27293390-27293548,27293877-27294194,
27294535-27294795,27294901-27294978,27295707-27295901
Length = 401
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 274 LDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQY 420
LD +V + P+K + G V + + LL+K DI+I GG Y
Sbjct: 180 LDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDILILGGGMIY 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,045,083
Number of Sequences: 37544
Number of extensions: 457901
Number of successful extensions: 1189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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