Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0429
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        99   5e-21
SB_12339| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.79 
SB_52960| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_35558| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_14584| Best HMM Match : IBV_3C (HMM E-Value=4.1)                    28   7.3  

>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 98.7 bits (235), Expect = 5e-21
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = +3

Query: 510 YGPSLMPGGHPAAWPHIKEIFQAICAKANDEPCCDWVGEDGAGHFVKMVH 659
           YGPSLMPGG   AWPHIK IFQAI AKA ++PCCDWVG DG+GHFVKMVH
Sbjct: 183 YGPSLMPGGSEKAWPHIKPIFQAIAAKAGNDPCCDWVGGDGSGHFVKMVH 232



 Score = 70.1 bits (164), Expect(2) = 1e-20
 Identities = 30/47 (63%), Positives = 37/47 (78%)
 Frame = +1

Query: 367 IPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILYVGMGVSGGEDGA 507
           +PLL  GDIIIDGGNS+Y D+ + CK L   G+L+VG GVSGGE+GA
Sbjct: 135 VPLLESGDIIIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGA 181



 Score = 48.0 bits (109), Expect(2) = 1e-20
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = +1

Query: 265 ATSLDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLI 369
           A SL +MVSKLK+PR++++LVKAG AVD F+  L+
Sbjct: 68  AHSLQEMVSKLKKPRRVMILVKAGSAVDAFIDHLV 102



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 29/51 (56%), Positives = 32/51 (62%)
 Frame = +2

Query: 113 ADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTK*LG 265
           ADIALIGLAVM              VCA NRTV KV+ FL NEAKGT+ +G
Sbjct: 31  ADIALIGLAVM--------------VCAHNRTVEKVDRFLANEAKGTRIVG 67


>SB_12339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 719 HIFHKMISRR*VAYHHIQFHVHHFDKMACSIFTDPVTARFIISFSAY 579
           HI ++ I  R + YHHI++    + +   S   DP+   F  S  A+
Sbjct: 69  HIEYRYIKYRHIEYHHIEYRYIEYRRFEYSYIEDPLYPTFFKSLVAH 115


>SB_52960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 525 MPGGHPAAWPHI-KEIFQAICAKANDEPCCDWVGEDGAGHFVKMVHMELNMVICN 686
           +PG     +  I K+I++  C ++NDE  CD++   G    +K   M+L  + CN
Sbjct: 636 VPGDGDCCFTSIMKQIYR--CFESNDEEYCDFLRSLGFVGDIKKDVMQLRYLFCN 688


>SB_35558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 719 HIFHKMISRR*VAYHHIQFHVHHFDKMACSIFTDPV 612
           HI ++ I  R + YHHI++    + +   S   DP+
Sbjct: 182 HIEYRYIKYRHIEYHHIEYRYIEYRRFEYSYIEDPL 217


>SB_14584| Best HMM Match : IBV_3C (HMM E-Value=4.1)
          Length = 311

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -1

Query: 740 FILFNTYHIFHKMISRR*VAYHHIQFHVHHFDKMACSIFTDPVTARFIISFSAYGLEN 567
           +IL+    + H ++ R    ++  ++ +   D+   SI TD V +  I+ FSA  +EN
Sbjct: 176 YILWYLDPVIHTVVPRSRATFYVFKY-IFTKDQRNMSIITDEVPSIPIVDFSALSIEN 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,259,795
Number of Sequences: 59808
Number of extensions: 513446
Number of successful extensions: 1059
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)