Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0420
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    33   0.052
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    31   0.21 
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    29   0.48 
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   5.9  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.9  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    25   7.8  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = -3

Query: 221  HSHLPFWWTSEKY-----GALKERRGEVYFYFYQQLLARYYFERLTNGLGKIPEFSWYSP 57
            HSHLPF +T E +     G +KE        + Q+      F      + K    +WY  
Sbjct: 1085 HSHLPFKFTPESFIKIRNGNVKEEARRTRNAYTQKSGEVECFMETCTPIAKPAPANWYPV 1144

Query: 56   IPTGYYPSLLTKFT 15
             P G+  SLL++ T
Sbjct: 1145 PPPGFNSSLLSRLT 1158


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 311  IGFVNEVVVFLVNAILSCGFRINEAILHLCYVNFLQHFHIHKHFRVY 451
            I  + + V  +++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 917  IHVIEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 130 YWLVTTLSVLPMDLVRFPNS 71
           YW++TTLS+ P DLVR  N+
Sbjct: 108 YWMMTTLSLEPGDLVRVINT 127


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
            Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 390  KMASLILKPQLSMAFTRKTTTSFTKPIILTPFYTIMKN 277
            ++A+   +P +   F  K T   TKPI++   + IMK+
Sbjct: 949  RLAASYGQPIIFQKFKEKLTHKGTKPIVVLNIFQIMKS 986


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 574 VLQDCLFCACASQSRSILVCLLIAVIQRS 488
           +L++    A  + S S  VCL  A+IQRS
Sbjct: 525 ILENAALSATQNNSDSFAVCLACAMIQRS 553


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 254 DIGMNAYYYYFHSHLPFWWTSEKYG 180
           DIGM AY       L F W S+++G
Sbjct: 119 DIGMIAYVGTIVGQLSFGWYSDRFG 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,872
Number of Sequences: 5004
Number of extensions: 55608
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)