Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0420
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    28   6.2  
10_08_0351 - 17069974-17070232,17070470-17071751,17071908-170719...    28   6.2  
06_03_0522 - 21726317-21726634,21727202-21727654,21727771-217280...    28   6.2  
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076...    28   8.1  
01_06_0846 + 32408333-32408484,32408560-32408926,32409021-324093...    28   8.1  
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168...    28   8.1  

>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
            852330-852409,852506-852848,853068-853166,853240-853360,
            853567-853723,853976-854099,855275-855368,855866-857259,
            857882-857924,858240-858458,859379-859605,859701-859948,
            860246-860552,860725-861153
          Length = 1486

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 356  LSCGFRINEAILHLCYVNFLQHFHIHKHFRVYFIR 460
            L  GFR++ A+ +LC + +L+   I K  R   IR
Sbjct: 1002 LKAGFRLSSALFYLCNILWLRAVKIRKKLRRQGIR 1036


>10_08_0351 - 17069974-17070232,17070470-17071751,17071908-17071969,
            17072109-17072181,17072399-17072466,17073023-17073207,
            17073311-17073452,17073665-17073720,17074003-17074056,
            17074679-17074782,17075012-17075112,17075717-17075790,
            17076482-17076560,17076668-17076744,17076875-17076931,
            17077058-17077168,17077254-17077334
          Length = 954

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 557  VLRVCISIKVNSCMPSNRCYPAL*LPRFRCSC 462
            ++R    I V    P NRC+P+     FRC C
Sbjct: 926  MIRAMNEINVRKIAPDNRCFPS---SAFRCEC 954


>06_03_0522 -
           21726317-21726634,21727202-21727654,21727771-21728025,
           21728109-21728249,21728404-21728565,21728660-21728820,
           21731598-21731733
          Length = 541

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 302 VRIIGFVNEVVVFLVNAILSCGFRINEAILHLC 400
           V I+G +N+  +FL   +LSC  R+ + I  +C
Sbjct: 350 VGILGIINQSFLFLAFFLLSCQERLYQEIREVC 382


>12_01_1025 -
           10506144-10506226,10506643-10506699,10507502-10507605,
           10507884-10507937,10508107-10508193,10509027-10509214,
           10509793-10509854,10510084-10510354,10510756-10510834,
           10511715-10511913,10512816-10512960,10513324-10513416,
           10514449-10514736
          Length = 569

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 579 ETFYKTACFARVHLNQGQ 526
           ETF+ TAC  R HL QG+
Sbjct: 427 ETFFTTACMGRGHLCQGK 444


>01_06_0846 +
           32408333-32408484,32408560-32408926,32409021-32409301,
           32409877-32409931,32410137-32410331,32410417-32410569
          Length = 400

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 196 HQKNTEPLKSVVERFTSTSTSNYWLVTTLSVLPMDLVRFPNSH 68
           H +NT P K  + +FT T TS+    T+    P+D V   + H
Sbjct: 158 HHRNTGPTKRWLLQFTYTGTSSQAAGTSSQGPPLDHVGTSSDH 200


>01_05_0337 +
           21115388-21115961,21116471-21116597,21116683-21116884,
           21117460-21117546,21117622-21117681,21117800-21117886,
           21118451-21118522,21118675-21118730,21118812-21118897,
           21119427-21119517,21119593-21119750,21119827-21119918,
           21120110-21120190,21120282-21120479
          Length = 656

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
 Frame = -1

Query: 574 VLQDCLFCACASQSRSILVCLLIAVIQ-RSDCHGFVVPAPYEVYPKMFMNMEVLQKIYVT 398
           VL +C    C +Q+  IL    + V   ++   G V     E+ P+ F  M+   + +  
Sbjct: 530 VLIECSNMPCTAQAVDILRTAKVVVAPAKATAAGGVAVGELELNPE-FSLMQWSVEDFEN 588

Query: 397 KMQDGLINP-----EAAAKYGIHKENDYFVY 320
           K+QD +        +AA  YGI KEN   V+
Sbjct: 589 KIQDAVKQTYDRSIKAAQDYGIMKENPELVF 619


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,349,456
Number of Sequences: 37544
Number of extensions: 332049
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)