Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0420
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17848| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)          30   1.6  

>SB_17848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 623 KLLLYSIYSITLRTLKRSTRLPVLRVCISIK-VNSCMPSNRCYP 495
           +LLL S   +TL   +R +R   LR CI I+  N   PSN C P
Sbjct: 35  RLLLLSELQLTLSGSERKSRFEDLRQCIQIQGSNWYPPSNSCSP 78


>SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)
          Length = 253

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 559 LFCACASQSRSILVCLLIAVIQRSDCHGFVVPAPYEVYPKMFM 431
           L CACA+Q+  +  C +IA +  S  H   VP     YP + +
Sbjct: 139 LVCACANQAPELFGC-IIAQVPYSPLHNIKVPDNGAQYPPLML 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,414,710
Number of Sequences: 59808
Number of extensions: 394444
Number of successful extensions: 1083
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)