Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0420
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    30   1.4  
AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and bel...    30   1.4  
AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and bel...    30   1.4  
U40944-2|ABC71812.1|  306|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U40944-1|AAA81718.3|  341|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical pr...    28   7.3  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    28   7.3  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     28   7.3  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    28   7.3  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        27   9.7  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    27   9.7  
AC199241-1|ABO33279.1|  343|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 382 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 278
           +++P       IHKE   F YK+N   A+LY   E
Sbjct: 227 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 261


>AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform b protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 382 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 278
           +++P       IHKE   F YK+N   A+LY   E
Sbjct: 211 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 245


>AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform a protein.
          Length = 641

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 382 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 278
           +++P       IHKE   F YK+N   A+LY   E
Sbjct: 208 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 242


>U40944-2|ABC71812.1|  306|Caenorhabditis elegans Hypothetical
           protein PDB1.1b protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 562 CLFCACASQSRSILVCLLIAVIQRSDC 482
           CLF  C  + R    CL++A+ QR+DC
Sbjct: 145 CLFMIC--RVRKSAACLVLAIDQRNDC 169


>U40944-1|AAA81718.3|  341|Caenorhabditis elegans Hypothetical
           protein PDB1.1a protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 562 CLFCACASQSRSILVCLLIAVIQRSDC 482
           CLF  C  + R    CL++A+ QR+DC
Sbjct: 180 CLFMIC--RVRKSAACLVLAIDQRNDC 204


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 377 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRA 493
           N  I     V  L H HIH++ + +F+  + N TV   A
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVCSAA 190


>Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical
           protein M153.2 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 347 NAILSCGFRINEAILHLCYVNFLQHFHIHK 436
           +AI+ CG  ++  +  LCY+NF Q   + K
Sbjct: 295 DAIILCGTIVHLVVYALCYINFPQDSSLKK 324


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 392  HLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSD*KAYK 523
            H+ ++ +L H H  KHF V+       +TV++R  D  +   +K
Sbjct: 1929 HVAFMEYLFHPHSRKHFPVFV---EKLDTVSVREHDEQELAVFK 1969


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 377 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRA 493
           N  I     V  L H HIH++ + +F+  + N TV   A
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVCSAA 190


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 377 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRA 493
           N  I     V  L H HIH++ + +F+  + N TV   A
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVCSAA 190


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 639 DKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 532
           D+M DEAI LF        FE +YK     R+ L +
Sbjct: 464 DQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 639 DKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 532
           D+M DEAI LF        FE +YK     R+ L +
Sbjct: 501 DQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


>AC199241-1|ABO33279.1|  343|Caenorhabditis elegans Hypothetical
           protein 2RSSE.1 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 214 IYRSGGHQKNTEPLKSVVERFTSTSTSNYWLVTTLSVLPMDLVRFPN 74
           I+R+ G+Q     L  V++     +  N+ + T  SV+   L + PN
Sbjct: 61  IWRAPGNQAQVRKLSQVMQHGRLVNIENFTVYTAASVIKKFLSKLPN 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,221,447
Number of Sequences: 27780
Number of extensions: 306678
Number of successful extensions: 753
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)