Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0420
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36305.1 68415.m04456 CAAX amino terminal protease family pro...    30   1.7  
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi...    29   3.9  
At5g65960.1 68418.m08303 expressed protein                             28   6.8  
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ...    27   9.0  

>At2g36305.1 68415.m04456 CAAX amino terminal protease family
           protein similar to CAAX prenyl protease 2 (EC 3.4.22.-)
           (Prenyl protein-specific endoprotease 2)
           (Farnesylated-proteins converting enzyme 2) (FACE-2)
           from Mus musculus [SP|P57791], Homo sapiens [SP|Q9Y256],
           Drosophila melanogaster [SP|Q9U1H8]; contains Pfam
           profile PF02517 CAAX amino terminal protease family
           protein
          Length = 242

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +2

Query: 320 VNEVVVF---LVNAILSCGFRINEAILHLCYVNF-LQHFHIHKHFRVYFIR 460
           V E +VF   ++  +L  GFRIN AI  LC V F L H +   HFR  +IR
Sbjct: 93  VTEELVFRSCMIPLLLCAGFRINTAIF-LCPVLFSLAHLN---HFREMYIR 139


>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 991

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 602 YSITLRTLKRSTRLPVLRVC-ISIKVNSCMPSNRCYPAL 489
           Y+I LR L R+ +   LR+C I +  N  +P+N  Y  L
Sbjct: 148 YNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGML 186


>At5g65960.1 68418.m08303 expressed protein
          Length = 393

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 441 LGYTSYGAGTTKPWQS--ERWITAIRRHTRID 530
           L Y    AG+  PW +  ERW++A   H+  D
Sbjct: 251 LEYEVLSAGSGDPWDNIEERWVSASETHSHAD 282


>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 692

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 408 IFCSTSIFINILGYTSYGAGTTKPW 482
           ++CS     + LGYT  GA T  PW
Sbjct: 640 VYCSCYCVSSQLGYTYKGADTCPPW 664


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,299,914
Number of Sequences: 28952
Number of extensions: 279800
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)